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Report for CCDS48729.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48729.1 Public Mus musculus 10 Pym1 23 108 98 CCDS HistoryNCBI Gene:78428Re-query CCDS DB by CCDS ID:48729.1Re-query CCDS DB by GeneID:78428See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48729.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163377.9 ENSMUSP00000129789.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163377.9Link to Ensembl Protein Viewer:ENSMUSP00000129789.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000163377Re-query CCDS DB by Protein ID:ENSMUSP00000129789
Original member Current member NCBI NM_030100.4 NP_084376.2 Accepted alive Link to Nucleotide Sequence:NM_030100.4Link to Protein Sequence:NP_084376.2Re-query CCDS DB by Nucleotide ID:NM_030100Re-query CCDS DB by Protein ID:NP_084376Link to BLAST:NP_084376.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084376.2 203 Q8CHP5-1 203 100% 0 0

Chromosomal Locations for CCDS 48729.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128747962 128747998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128765147 128765240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128765610 128766090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGGAAACCGCCAGCACCCCCGAGGCCACGGGGACAGGCAAGTACATTGCCTCAACACAGAGACCCGACG
GGACGTGGCGAAAGCAGCGGAGGGTCAAAGAAGGATACGTGCCCCAAGAGGAGGTCCCAGTCTATGAAAA
CAAGTATGTGAAGTTTTTCAAGAGTAAACCAGAACTTCCCCCAGGGCTGAGCCCTGAGGCCACCACACCG
GTCACCCCATCCAGACCTGAAGGTGGTGAGACAGGCCTCTCCAAGACAGCCAAACGAAACCTGAAGCGGA
AGGAGAAGAGGCGGCAGCAACAGGAGAAAGAAGCAGAGGCCTTGAGCAGGACTCTTGATAAGGTGTCTCT
GGGAGACACAGCCCAGATACCTAGTGCTCTCCAAGGCCCCCAGGCCACGCCTCTAGCTGCCTCTGATCCA
TCCGACTCTGCTGCCACCACAGAGAAAGCCAAGAAGATCAAGAACCTGAGGAAGAAGCTTCGGCAGGTGG
AGGAGCTGCAGCAACGCATCCAGGCCGGGGAGGTCAGCCAGCCCAGCAGAGAACAGCTGGAGAAGCTGGC
TCGACGGAGGGTTCTGGAGGAGGAGCTGGAGGACTTGGAGTTGGGCCTGTGA

Translation (203 aa):
METASTPEATGTGKYIASTQRPDGTWRKQRRVKEGYVPQEEVPVYENKYVKFFKSKPELPPGLSPEATTP
VTPSRPEGGETGLSKTAKRNLKRKEKRRQQQEKEAEALSRTLDKVSLGDTAQIPSALQGPQATPLAASDP
SDSAATTEKAKKIKNLRKKLRQVEELQQRIQAGEVSQPSREQLEKLARRRVLEEELEDLELGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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