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Report for CCDS59081.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59081.1 Public Homo sapiens 7 MEST 24 110 108 CCDS HistoryNCBI Gene:4232Re-query CCDS DB by CCDS ID:59081.1Re-query CCDS DB by GeneID:4232See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59081.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378576.9 ENSP00000367839.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378576.9Link to Ensembl Protein Viewer:ENSP00000367839.4Re-query CCDS DB by Nucleotide ID:ENST00000378576Re-query CCDS DB by Protein ID:ENSP00000367839
Original member Current member EBI ENST00000416162.7 ENSP00000408933.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000416162.7Link to Ensembl Protein Viewer:ENSP00000408933.2Re-query CCDS DB by Nucleotide ID:ENST00000416162Re-query CCDS DB by Protein ID:ENSP00000408933
Original member Current member EBI ENST00000427521.6 ENSP00000409505.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000427521.6Link to Ensembl Protein Viewer:ENSP00000409505.2Re-query CCDS DB by Nucleotide ID:ENST00000427521Re-query CCDS DB by Protein ID:ENSP00000409505
Original member Current member NCBI NM_001253901.1 NP_001240830.1 Accepted alive Link to Nucleotide Sequence:NM_001253901.1Link to Protein Sequence:NP_001240830.1Re-query CCDS DB by Nucleotide ID:NM_001253901Re-query CCDS DB by Protein ID:NP_001240830Link to BLAST:NP_001240830.1
Original member Current member NCBI NM_001253902.1 NP_001240831.1 Accepted alive Link to Nucleotide Sequence:NM_001253902.1Link to Protein Sequence:NP_001240831.1Re-query CCDS DB by Nucleotide ID:NM_001253902Re-query CCDS DB by Protein ID:NP_001240831Link to BLAST:NP_001240831.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240830.1 292 Q5EB52-3 292 100% 0 0
NP_001240831.1 292 Q5EB52-3 292 100% 0 0

Chromosomal Locations for CCDS 59081.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 130495369 130495522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130497156 130497235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130497936 130498013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130498139 130498275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130498419 130498477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130499875 130499915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130500462 130500532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130502644 130502720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130503933 130503996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130504939 130505056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGAGGGAGTGGTGGGTCCAGGTGGGGCTGCTGGCCGTGCCCCTGCTTGCTGCGTACCTGCACATCCCAC
CCCCTCAGCTCTCCCCTGCCCTTCACTCATGGAAGTCTTCAGGCAAGTTTTTCACTTACAAGGGACTGCG
TATCTTCTACCAAGACTCTGTGGGTGTGGTTGGAAGTCCAGAGATAGTTGTGCTTTTACACGGTTTTCCA
ACATCCAGCTACGACTGGTACAAGATTTGGGAAGGTCTGACCTTGAGGTTTCATCGGGTGATTGCCCTTG
ATTTCTTAGGCTTTGGCTTCAGTGACAAACCGAGACCACATCACTATTCCATATTTGAGCAGGCCAGCAT
CGTGGAAGCGCTTTTGCGGCATCTGGGGCTCCAGAACCGCAGGATCAACCTTCTTTCTCATGACTATGGA
GATATTGTTGCTCAGGAGCTTCTCTACAGGTACAAGCAGAATCGATCTGGTCGGCTTACCATAAAGAGTC
TCTGTCTGTCAAATGGAGGTATCTTTCCTGAGACTCACCGTCCACTCCTTCTCCAAAAGCTACTCAAAGA
TGGAGGTGTGCTGTCACCCATCCTCACACGACTGATGAACTTCTTTGTATTCTCTCGAGGTCTCTTACAG
TACATCAATCAGAGGAAGAAGTTCAGAAGGCGCTGGGTGGGAGCTCTTGCCTCTGTAACTATCCCCATTC
ATTTTATCTATGGGCCATTGGATCCTGTAAATCCCTATCCAGAGTTTTTGGAGCTGTACAGGAAAACGCT
GCCGCGGTCCACAGTGTCGATTCTGGATGACCACATTAGCCACTATCCACAGCTAGAGGATCCCATGGGC
TTCTTGAATGCATATATGGGCTTCATCAACTCCTTCTGA

Translation (292 aa):
MREWWVQVGLLAVPLLAAYLHIPPPQLSPALHSWKSSGKFFTYKGLRIFYQDSVGVVGSPEIVVLLHGFP
TSSYDWYKIWEGLTLRFHRVIALDFLGFGFSDKPRPHHYSIFEQASIVEALLRHLGLQNRRINLLSHDYG
DIVAQELLYRYKQNRSGRLTIKSLCLSNGGIFPETHRPLLLQKLLKDGGVLSPILTRLMNFFVFSRGLLQ
YINQRKKFRRRWVGALASVTIPIHFIYGPLDPVNPYPEFLELYRKTLPRSTVSILDDHISHYPQLEDPMG
FLNAYMGFINSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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