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Report for CCDS11407.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11407.1 Public Homo sapiens 17 JUP 24 110 108 CCDS HistoryNCBI Gene:3728Re-query CCDS DB by CCDS ID:11407.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11407.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310706.9 ENSP00000311113.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000310706.9Link to Ensembl Protein Viewer:ENSP00000311113.5Re-query CCDS DB by Nucleotide ID:ENST00000310706Re-query CCDS DB by Protein ID:ENSP00000311113
Original member Current member EBI ENST00000393930.5 ENSP00000377507.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393930.5Link to Ensembl Protein Viewer:ENSP00000377507.1Re-query CCDS DB by Nucleotide ID:ENST00000393930Re-query CCDS DB by Protein ID:ENSP00000377507
Original member Current member EBI ENST00000393931.8 ENSP00000377508.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393931.8Link to Ensembl Protein Viewer:ENSP00000377508.3Re-query CCDS DB by Nucleotide ID:ENST00000393931Re-query CCDS DB by Protein ID:ENSP00000377508
Original member Current member NCBI NM_001352773.2 NP_001339702.1 Accepted alive Link to Nucleotide Sequence:NM_001352773.2Link to Protein Sequence:NP_001339702.1Re-query CCDS DB by Nucleotide ID:NM_001352773Re-query CCDS DB by Protein ID:NP_001339702Link to BLAST:NP_001339702.1
Original member Current member NCBI NM_001352774.2 NP_001339703.1 Accepted alive Link to Nucleotide Sequence:NM_001352774.2Link to Protein Sequence:NP_001339703.1Re-query CCDS DB by Nucleotide ID:NM_001352774Re-query CCDS DB by Protein ID:NP_001339703Link to BLAST:NP_001339703.1
Original member Current member NCBI NM_001352775.2 NP_001339704.1 Accepted alive Link to Nucleotide Sequence:NM_001352775.2Link to Protein Sequence:NP_001339704.1Re-query CCDS DB by Nucleotide ID:NM_001352775Re-query CCDS DB by Protein ID:NP_001339704Link to BLAST:NP_001339704.1
Original member Current member NCBI NM_001352776.2 NP_001339705.1 Accepted alive Link to Nucleotide Sequence:NM_001352776.2Link to Protein Sequence:NP_001339705.1Re-query CCDS DB by Nucleotide ID:NM_001352776Re-query CCDS DB by Protein ID:NP_001339705Link to BLAST:NP_001339705.1
Original member Current member NCBI NM_001352777.2 NP_001339706.1 Accepted alive Link to Nucleotide Sequence:NM_001352777.2Link to Protein Sequence:NP_001339706.1Re-query CCDS DB by Nucleotide ID:NM_001352777Re-query CCDS DB by Protein ID:NP_001339706Link to BLAST:NP_001339706.1
Original member Current member NCBI NM_002230.4 NP_002221.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002230.4Link to Protein Sequence:NP_002221.1Re-query CCDS DB by Nucleotide ID:NM_002230Re-query CCDS DB by Protein ID:NP_002221Link to BLAST:NP_002221.1
Original member Current member NCBI NM_021991.4 NP_068831.1 Accepted alive Link to Nucleotide Sequence:NM_021991.4Link to Protein Sequence:NP_068831.1Re-query CCDS DB by Nucleotide ID:NM_021991Re-query CCDS DB by Protein ID:NP_068831Link to BLAST:NP_068831.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001339702.1 745 P14923 745 100% 0 0
NP_001339703.1 745 P14923 745 100% 0 0
NP_001339704.1 745 P14923 745 100% 0 0
NP_001339705.1 745 P14923 745 100% 0 0
NP_001339706.1 745 P14923 745 100% 0 0
NP_002221.1 745 P14923 745 100% 0 0
NP_068831.1 745 P14923 745 100% 0 0

Chromosomal Locations for CCDS 11407.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 41755744 41755895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41756175 41756214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41757415 41757536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41757634 41757784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41758399 41758518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41758715 41758870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41762983 41763321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41764713 41764816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41764923 41765067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41767379 41767580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41768969 41769207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41769418 41769677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41771647 41771854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2238 nt):
ATGGAGGTGATGAACCTGATGGAGCAGCCTATCAAGGTGACTGAGTGGCAGCAGACATACACCTACGACT
CGGGTATCCACTCGGGCGCCAACACCTGCGTGCCCTCCGTCAGCAGCAAGGGCATCATGGAGGAGGATGA
GGCCTGCGGGCGCCAGTACACGCTCAAGAAAACCACCACTTACACCCAGGGGGTGCCCCCCAGCCAAGGT
GATCTGGAGTACCAGATGTCCACAACAGCCAGGGCCAAACGGGTGCGGGAGGCCATGTGCCCTGGTGTGT
CAGGCGAGGACAGCTCGCTTCTGCTGGCCACCCAGGTGGAGGGGCAGGCCACCAACCTGCAGCGACTGGC
CGAGCCGTCCCAGCTGCTCAAGTCGGCCATTGTGCATCTCATCAACTACCAGGACGATGCCGAGCTGGCC
ACTCGCGCCCTGCCCGAGCTCACCAAACTGCTCAACGACGAGGACCCGGTGGTGGTGACCAAGGCGGCCA
TGATTGTGAACCAGCTGTCGAAGAAGGAGGCGTCGCGGCGGGCCCTGATGGGCTCGCCCCAGCTGGTGGC
CGCTGTCGTGCGTACCATGCAGAATACCAGCGACCTGGACACAGCCCGCTGCACCACCAGCATCCTGCAC
AACCTCTCCCACCACCGGGAGGGGCTGCTCGCCATCTTCAAGTCGGGTGGCATCCCTGCTCTGGTCCGCA
TGCTCAGCTCCCCTGTGGAGTCGGTCCTGTTCTATGCCATCACCACGCTGCACAACCTGCTCCTGTACCA
GGAGGGCGCCAAGATGGCCGTGCGCCTGGCCGACGGGCTGCAAAAGATGGTGCCCCTGCTCAACAAGAAC
AACCCCAAGTTCCTGGCCATCACCACCGACTGCCTGCAGCTCCTGGCCTACGGCAACCAGGAGAGCAAGC
TGATCATCCTGGCCAATGGTGGGCCCCAGGCCCTCGTGCAGATCATGCGTAACTACAGTTATGAAAAGCT
GCTCTGGACCACCAGTCGTGTGCTCAAGGTGCTATCCGTGTGTCCCAGCAATAAGCCTGCCATTGTGGAG
GCTGGTGGGATGCAGGCCCTGGGCAAGCACCTGACCAGCAACAGCCCCCGCCTGGTGCAGAACTGCCTGT
GGACCCTGCGCAACCTCTCAGATGTGGCCACCAAGCAGGAGGGCCTGGAGAGTGTGCTGAAGATTCTGGT
GAATCAGCTGAGTGTGGATGACGTCAACGTCCTCACCTGTGCCACGGGCACACTCTCCAACCTGACATGC
AACAACAGCAAGAACAAGACGCTGGTGACACAGAACAGCGGTGTGGAGGCTCTCATCCATGCCATCCTGC
GTGCTGGTGACAAGGACGACATCACGGAGCCTGCCGTCTGCGCTCTGCGCCACCTCACTAGCCGCCACCC
TGAGGCCGAGATGGCCCAGAACTCTGTGCGTCTCAACTATGGCATCCCAGCCATCGTGAAGCTGCTCAAC
CAGCCCAACCAGTGGCCACTGGTCAAGGCAACCATCGGCTTGATCAGGAATCTGGCCCTGTGCCCAGCCA
ACCATGCCCCGCTGCAGGAGGCAGCGGTCATCCCCCGCCTCGTCCAACTGCTGGTGAAGGCCCACCAGGA
TGCCCAGCGCCACGTAGCTGCAGGCACACAGCAGCCCTACACGGATGGTGTGAGGATGGAGGAGATTGTG
GAGGGCTGCACCGGAGCACTGCACATCCTCGCCCGGGACCCCATGAACCGCATGGAGATCTTCCGGCTCA
ACACCATTCCCCTGTTTGTGCAGCTCCTGTACTCGTCGGTGGAGAACATCCAGCGCGTGGCTGCCGGGGT
GCTGTGTGAGCTGGCCCAGGACAAGGAGGCGGCCGACGCCATTGATGCAGAGGGGGCCTCGGCCCCACTC
ATGGAGTTGCTGCACTCCCGCAACGAGGGCACTGCCACCTACGCTGCTGCCGTCCTGTTCCGCATCTCCG
AGGACAAGAACCCAGACTACCGGAAGCGCGTGTCCGTGGAGCTCACCAACTCCCTCTTCAAGCATGACCC
GGCTGCCTGGGAGGCTGCCCAGAGCATGATTCCCATCAATGAGCCCTATGGAGATGACATGGATGCCACC
TACCGCCCCATGTACTCCAGCGATGTGCCCCTTGACCCGCTGGAGATGCACATGGACATGGATGGAGACT
ACCCCATCGACACCTACAGCGACGGCCTCAGGCCCCCGTACCCCACTGCAGACCACATGCTGGCCTAG

Translation (745 aa):
MEVMNLMEQPIKVTEWQQTYTYDSGIHSGANTCVPSVSSKGIMEEDEACGRQYTLKKTTTYTQGVPPSQG
DLEYQMSTTARAKRVREAMCPGVSGEDSSLLLATQVEGQATNLQRLAEPSQLLKSAIVHLINYQDDAELA
TRALPELTKLLNDEDPVVVTKAAMIVNQLSKKEASRRALMGSPQLVAAVVRTMQNTSDLDTARCTTSILH
NLSHHREGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLNKN
NPKFLAITTDCLQLLAYGNQESKLIILANGGPQALVQIMRNYSYEKLLWTTSRVLKVLSVCPSNKPAIVE
AGGMQALGKHLTSNSPRLVQNCLWTLRNLSDVATKQEGLESVLKILVNQLSVDDVNVLTCATGTLSNLTC
NNSKNKTLVTQNSGVEALIHAILRAGDKDDITEPAVCALRHLTSRHPEAEMAQNSVRLNYGIPAIVKLLN
QPNQWPLVKATIGLIRNLALCPANHAPLQEAAVIPRLVQLLVKAHQDAQRHVAAGTQQPYTDGVRMEEIV
EGCTGALHILARDPMNRMEIFRLNTIPLFVQLLYSSVENIQRVAAGVLCELAQDKEAADAIDAEGASAPL
MELLHSRNEGTATYAAAVLFRISEDKNPDYRKRVSVELTNSLFKHDPAAWEAAQSMIPINEPYGDDMDAT
YRPMYSSDVPLDPLEMHMDMDGDYPIDTYSDGLRPPYPTADHMLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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