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Report for CCDS7849.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7849.1 Public Homo sapiens 11 E2F8 24 110 108 CCDS HistoryNCBI Gene:79733Re-query CCDS DB by CCDS ID:7849.1Re-query CCDS DB by GeneID:79733See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7849.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000250024.9 ENSP00000250024.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000250024.9Link to Ensembl Protein Viewer:ENSP00000250024.4Re-query CCDS DB by Nucleotide ID:ENST00000250024Re-query CCDS DB by Protein ID:ENSP00000250024
Original member Current member EBI ENST00000527884.5 ENSP00000434199.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000527884.5Link to Ensembl Protein Viewer:ENSP00000434199.1Re-query CCDS DB by Nucleotide ID:ENST00000527884Re-query CCDS DB by Protein ID:ENSP00000434199
Original member Current member EBI ENST00000620009.4 ENSP00000481103.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000620009.4Link to Ensembl Protein Viewer:ENSP00000481103.1Re-query CCDS DB by Nucleotide ID:ENST00000620009Re-query CCDS DB by Protein ID:ENSP00000481103
Original member Current member NCBI NM_001256371.2 NP_001243300.1 Accepted alive Link to Nucleotide Sequence:NM_001256371.2Link to Protein Sequence:NP_001243300.1Re-query CCDS DB by Nucleotide ID:NM_001256371Re-query CCDS DB by Protein ID:NP_001243300Link to BLAST:NP_001243300.1
Original member Current member NCBI NM_001256372.1 NP_001243301.1 Accepted alive Link to Nucleotide Sequence:NM_001256372.1Link to Protein Sequence:NP_001243301.1Re-query CCDS DB by Nucleotide ID:NM_001256372Re-query CCDS DB by Protein ID:NP_001243301Link to BLAST:NP_001243301.1
Original member Current member NCBI NM_024680.4 NP_078956.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024680.4Link to Protein Sequence:NP_078956.2Re-query CCDS DB by Nucleotide ID:NM_024680Re-query CCDS DB by Protein ID:NP_078956Link to BLAST:NP_078956.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243300.1 867 A0AVK6 867 100% 0 0
NP_001243301.1 867 A0AVK6 867 100% 0 0
NP_078956.2 867 A0AVK6 867 100% 0 0

Chromosomal Locations for CCDS 7849.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 19224658 19224840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19225221 19225615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19225732 19225864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19229454 19229988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19230241 19230328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19230631 19230834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19232234 19232371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19234360 19234521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19234744 19235058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19237314 19237470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19237854 19238132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19240107 19240121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2604 nt):
ATGGAGAACGAAAAGGAAAATCTCTTTTGTGAGCCACATAAAAGGGGACTAATGAAAACACCTCTGAAAG
AATCCACCACAGCAAATATCGTGTTGGCAGAGATCCAGCCTGACTTTGGCCCTTTAACCACACCTACCAA
GCCCAAGGAAGGCTCTCAGGGAGAGCCGTGGACACCGACAGCCAACCTGAAAATGCTCATCAGTGCTGTG
AGCCCTGAGATCCGCAACAGAGATCAGAAAAGGGGTTTGTTTGACAACAGAAGTGGATTACCTGAGGCCA
AAGACTGTATACACGAACACTTATCTGGAGATGAATTTGAGAAATCCCAACCAAGTCGAAAAGAGAAAAG
TTTAGGATTATTGTGTCATAAGTTCTTAGCACGATATCCTAATTATCCCAACCCTGCTGTGAATAATGAC
ATCTGCCTTGACGAAGTGGCAGAGGAACTTAATGTTGAACGTCGACGCATTTACGATATCGTGAACGTCC
TAGAGAGTTTACATATGGTGAGCCGCCTCGCCAAAAACAGGTACACTTGGCACGGGCGACACAATCTCAA
CAAAACCCTTGGCACCTTGAAGAGCATCGGGGAGGAGAATAAGTACGCCGAGCAGATTATGATGATCAAA
AAGAAAGAATATGAGCAAGAGTTTGACTTTATTAAGAGTTACAGTATAGAGGATCATATCATCAAATCAA
ACACTGGCCCAAATGGACACCCAGACATGTGTTTTGTGGAACTCCCTGGAGTGGAATTTCGGGCAGCTTC
TGTAAACAGCCGCAAAGACAAGTCTTTAAGGGTAATGAGCCAGAAATTTGTGATGCTGTTTTTGGTGTCA
ACGCCTCAGATAGTAAGCCTAGAAGTTGCTGCCAAGATTTTAATTGGGGAGGACCATGTGGAAGATTTGG
ATAAAAGCAAGTTTAAAACAAAAATTAGGAGGTTGTATGATATAGCTAATGTTCTGAGTAGCCTGGATCT
TATCAAGAAAGTTCATGTTACAGAGGAAAGAGGCCGAAAACCAGCTTTCAAATGGACCGGCCCAGAAATC
AGTCCAAATACCAGTGGCTCCAGCCCAGTCATTCATTTTACTCCCTCTGATTTGGAGGTGAGACGGTCTT
CAAAAGAGAACTGTGCCAAAAACCTCTTTTCCACACGTGGGAAACCAAACTTTACTCGACACCCATCTCT
TATCAAATTGGTAAAGAGTATAGAAAGTGATCGGAGAAAGATAAATTCTGCGCCCAGTAGCCCTATCAAG
ACCAACAAAGCTGAGAGTTCTCAGAATTCTGCACCCTTCCCAAGTAAAATGGCTCAGCTCGCAGCTATTT
GTAAAATGCAGTTAGAAGAGCAATCAAGTGAATCCAGACAGAAAGTGAAAGTACAGCTGGCAAGATCTGG
ACCCTGCAAACCAGTAGCCCCTCTGGACCCCCCAGTGAATGCTGAGATGGAGCTGACAGCACCGTCCCTC
ATCCAGCCCCTGGGAATGGTTCCCCTGATCCCCAGCCCCTTGTCATCAGCAGTGCCCCTGATCCTACCTC
AGGCCCCTTCAGGCCCATCCTATGCCATCTACCTGCAGCCCACTCAAGCCCACCAAAGTGTGACGCCACC
CCAAGGCCTGAGCCCAACGGTGTGCACCACCCACTCTTCTAAAGCTACTGGCTCAAAAGACTCCACAGAT
GCCACCACTGAGAAGGCAGCCAATGATACCTCAAAGGCCAGTGCCTCTACCAGGCCTGGAAGCTTGCTGC
CAGCACCAGAGAGGCAAGGGGCAAAGAGCCGAACCAGGGAGCCAGCTGGAGAAAGAGGCTCAAAGAGGGC
AAGCATGCTCGAGGACAGTGGTTCCAAAAAGAAATTTAAAGAGGACCTAAAAGGACTTGAAAATGTCTCC
GCAACCTTGTTCCCATCAGGATACCTAATCCCTCTCACGCAGTGCTCATCCCTGGGGGCAGAGTCCATTT
TGTCTGGTAAAGAAAACTCAAGTGCTCTTTCCCCAAACCACAGGATTTACAGCTCCCCAATTGCAGGTGT
TATTCCAGTGACATCATCTGAACTCACTGCTGTTAATTTTCCCTCTTTTCATGTAACACCGTTGAAGCTA
ATGGTCTCACCAACTTCCGTGGCAGCCGTACCTGTCGGGAACAGCCCGGCTCTCGCTTCAAGCCACCCTG
TTCCCATCCAGAACCCAAGCTCAGCCATTGTAAACTTCACCCTGCAGCACCTGGGACTCATCTCACCCAA
TGTGCAGTTGTCTGCCAGCCCTGGGTCTGGAATCGTTCCTGTGTCTCCAAGAATAGAGTCTGTTAATGTC
GCACCAGAAAATGCAGGCACTCAGCAAGGAAGGGCCACCAACTATGACTCACCAGTCCCAGGCCAGAGCC
AGCCAAATGGACAATCAGTTGCTGTGACAGGGGCACAACAGCCTGTTCCTGTGACACCCAAAGGGTCACA
ATTAGTGGCCGAAAGTTTCTTCCGTACCCCAGGTGGACCCACCAAGCCAACCAGCTCATCCTGCATGGAT
TTTGAGGGTGCTAATAAAACCTCCTTAGGAACTCTCTTTGTCCCACAGCGAAAACTGGAAGTCTCAACAG
AGGATGTCCATTAA

Translation (867 aa):
MENEKENLFCEPHKRGLMKTPLKESTTANIVLAEIQPDFGPLTTPTKPKEGSQGEPWTPTANLKMLISAV
SPEIRNRDQKRGLFDNRSGLPEAKDCIHEHLSGDEFEKSQPSRKEKSLGLLCHKFLARYPNYPNPAVNND
ICLDEVAEELNVERRRIYDIVNVLESLHMVSRLAKNRYTWHGRHNLNKTLGTLKSIGEENKYAEQIMMIK
KKEYEQEFDFIKSYSIEDHIIKSNTGPNGHPDMCFVELPGVEFRAASVNSRKDKSLRVMSQKFVMLFLVS
TPQIVSLEVAAKILIGEDHVEDLDKSKFKTKIRRLYDIANVLSSLDLIKKVHVTEERGRKPAFKWTGPEI
SPNTSGSSPVIHFTPSDLEVRRSSKENCAKNLFSTRGKPNFTRHPSLIKLVKSIESDRRKINSAPSSPIK
TNKAESSQNSAPFPSKMAQLAAICKMQLEEQSSESRQKVKVQLARSGPCKPVAPLDPPVNAEMELTAPSL
IQPLGMVPLIPSPLSSAVPLILPQAPSGPSYAIYLQPTQAHQSVTPPQGLSPTVCTTHSSKATGSKDSTD
ATTEKAANDTSKASASTRPGSLLPAPERQGAKSRTREPAGERGSKRASMLEDSGSKKKFKEDLKGLENVS
ATLFPSGYLIPLTQCSSLGAESILSGKENSSALSPNHRIYSSPIAGVIPVTSSELTAVNFPSFHVTPLKL
MVSPTSVAAVPVGNSPALASSHPVPIQNPSSAIVNFTLQHLGLISPNVQLSASPGSGIVPVSPRIESVNV
APENAGTQQGRATNYDSPVPGQSQPNGQSVAVTGAQQPVPVTPKGSQLVAESFFRTPGGPTKPTSSSCMD
FEGANKTSLGTLFVPQRKLEVSTEDVH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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