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Report for CCDS826.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
826.1 Public Homo sapiens 1 KCNA10 24 110 108 CCDS HistoryNCBI Gene:3744Re-query CCDS DB by CCDS ID:826.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 826.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369771.4 ENSP00000358786.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369771.4Link to Ensembl Protein Viewer:ENSP00000358786.2Re-query CCDS DB by Nucleotide ID:ENST00000369771Re-query CCDS DB by Protein ID:ENSP00000358786
Original member Current member NCBI NM_005549.2 NP_005540.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005549.2Link to Protein Sequence:NP_005540.1Re-query CCDS DB by Nucleotide ID:NM_005549Re-query CCDS DB by Protein ID:NP_005540Link to BLAST:NP_005540.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005540.1 511 Q16322 511 100% 0 0

Chromosomal Locations for CCDS 826.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 110517252 110518787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1536 nt):
ATGGATGTGTGTGGCTGGAAAGAAATGGAGGTTGCGCTGGTCAATTTTGATAATTCAGATGAAATCCAAG
AAGAGCCAGGCTATGCCACAGACTTCGACTCAACCAGCCCAAAAGGCCGGCCTGGGGGCAGCTCCTTCTC
CAACGGGAAGATCCTCATCAGCGAAAGCACCAACCATGAGACGGCCTTCTCCAAGCTTCCGGGAGACTAT
GCTGACCCCCCAGGGCCTGAGCCAGTGGTCCTAAATGAAGGAAACCAGCGGGTGATCATCAACATTGCTG
GGCTGAGATTTGAGACCCAGCTCAGAACCCTTAGTCAGTTCCCAGAGACTCTCCTGGGAGACCGGGAAAA
AAGGATGCAGTTCTTTGACTCCATGAGAAATGAGTATTTCTTTGATCGGAACCGGCCCAGTTTTGATGGA
ATCCTATATTATTACCAATCTGGTGGGAAAATTCGGCGCCCAGCCAATGTTCCCATTGATATCTTTGCTG
ATGAAATCTCCTTCTATGAGCTGGGTAGTGAGGCCATGGACCAGTTCCGGGAGGATGAAGGCTTCATCAA
AGACCCTGAAACACTGCTACCCACCAATGACATCCACCGTCAGTTCTGGCTCCTCTTTGAGTACCCTGAA
AGTTCCAGCGCTGCCCGTGCTGTGGCCGTGGTCTCGGTGTTGGTTGTGGTCATCTCCATCACCATCTTCT
GCCTGGAGACACTGCCAGAGTTCCGGGAGGATAGGGAGCTAAAGGTGGTCAGAGACCCCAATCTCAACAT
GAGCAAGACAGTCCTCTCCCAGACCATGTTCACCGACCCTTTCTTCATGGTGGAGTCTACCTGCATCGTG
TGGTTCACCTTCGAGCTGGTGCTCCGGTTCGTGGTCTGCCCCAGCAAGACTGACTTCTTCAGGAACATCA
TGAACATCATTGACATCATCTCCATTATCCCCTACTTTGCAACTCTCATCACAGAGCTAGTCCAGGAGAC
AGAGCCGAGTGCCCAACAGAACATGTCCCTGGCCATCCTGAGGATCATCCGCCTGGTGAGGGTCTTCCGC
ATCTTCAAGCTCTCGCGCCACTCCAAGGGGCTGCAGATCCTCGGGCAAACACTGAAGGCGTCCATGCGGG
AGTTGGGGTTGCTCATCTTCTTTCTCTTCATTGGAGTCATCCTCTTCTCCAGTGCAGTCTACTTTGCTGA
GGTGGATGAGCCAGAGTCCCATTTCTCTAGCATTCCTGATGGCTTCTGGTGGGCAGTGGTCACCATGACA
ACTGTAGGCTATGGGGACATGTGCCCGACCACCCCAGGGGGGAAGATTGTGGGCACTCTGTGTGCCATTG
CAGGGGTCCTCACCATTGCCCTCCCTGTGCCTGTCATTGTCTCCAACTTCAATTACTTCTACCACCGGGA
GACTGAGAATGAAGAAAAGCAGAACATCCCAGGAGAAATTGAAAGAATCCTCAACAGTGTAGGCTCAAGA
ATGGGCAGCACAGACTCTCTTAATAAGACCAATGGTGGCTGTTCCACAGAGAAGTCTAGGAAATGA

Translation (511 aa):
MDVCGWKEMEVALVNFDNSDEIQEEPGYATDFDSTSPKGRPGGSSFSNGKILISESTNHETAFSKLPGDY
ADPPGPEPVVLNEGNQRVIINIAGLRFETQLRTLSQFPETLLGDREKRMQFFDSMRNEYFFDRNRPSFDG
ILYYYQSGGKIRRPANVPIDIFADEISFYELGSEAMDQFREDEGFIKDPETLLPTNDIHRQFWLLFEYPE
SSSAARAVAVVSVLVVVISITIFCLETLPEFREDRELKVVRDPNLNMSKTVLSQTMFTDPFFMVESTCIV
WFTFELVLRFVVCPSKTDFFRNIMNIIDIISIIPYFATLITELVQETEPSAQQNMSLAILRIIRLVRVFR
IFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEVDEPESHFSSIPDGFWWAVVTMT
TVGYGDMCPTTPGGKIVGTLCAIAGVLTIALPVPVIVSNFNYFYHRETENEEKQNIPGEIERILNSVGSR
MGSTDSLNKTNGGCSTEKSRK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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