NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8227.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8227.1 Public Homo sapiens 11 DNAJB13 24 110 108 CCDS HistoryNCBI Gene:374407Re-query CCDS DB by CCDS ID:8227.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8227.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339764.6 ENSP00000344431.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000339764.6Link to Ensembl Protein Viewer:ENSP00000344431.1Re-query CCDS DB by Nucleotide ID:ENST00000339764Re-query CCDS DB by Protein ID:ENSP00000344431
Original member Current member NCBI NM_153614.4 NP_705842.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153614.4Link to Protein Sequence:NP_705842.2Re-query CCDS DB by Nucleotide ID:NM_153614Re-query CCDS DB by Protein ID:NP_705842Link to BLAST:NP_705842.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705842.2 316 P59910-1 316 100% 0 0

Chromosomal Locations for CCDS 8227.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73951070 73951137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73958317 73958420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73959494 73959655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73964878 73965035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73966138 73966251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73968345 73968458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73969246 73969322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73969961 73970114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGGGCCAGGATTATTACTCTGTGCTCGGGATCACTCGCAATTCAGAGGATGCCCAGATCAAGCAGGCGT
ACCGCAGACTCGCCCTTAAGCACCACCCGTTGAAGTCAAATGAGCCGTCTTCAGCAGAGATTTTCAGGCA
AATAGCAGAGGCCTACGACGTGCTGAGTGACCCCATGAAGAGAGGCATCTACGACAAGTTTGGAGAAGAG
GGCCTGAAGGGTGGGATTCCTTTGGAGTTTGGATCCCAGACCCCATGGACAACTGGTTACGTCTTCCATG
GCAAACCTGAAAAGGTGTTCCACGAGTTCTTTGGTGGAAACAACCCCTTCAGTGAGTTTTTTGATGCAGA
AGGAAGTGAGGTAGATTTGAACTTTGGGGGGCTCCAGGGCCGAGGGGTCAAGAAGCAGGACCCCCAAGTC
GAACGGGATCTCTACCTGTCCCTGGAGGACTTATTCTTTGGCTGCACCAAAAAAATTAAGATCTCCAGAA
GGGTGCTGAACGAGGATGGGTACTCCTCCACCATCAAGGACAAGATCCTGACCATTGATGTGAAGCCCGG
TTGGAGGCAGGGCACACGCATCACCTTTGAGAAGGAAGGGGACCAGGGCCCCAACATCATCCCAGCAGAC
ATCATTTTCATCGTAAAGGAGAAGCTACACCCTCGCTTCCGCAGGGAGAATGACAACCTCTTCTTCGTGA
ACCCCATCCCTCTTGGCAAGGCTCTCACCTGCTGCACTGTGGAGGTGAGGACCCTAGATGACCGTCTGCT
CAACATCCCCATCAATGACATCATCCACCCCAAATACTTCAAGAAGGTGCCAGGGGAGGGGATGCCATTG
CCGGAGGACCCCACTAAGAAAGGGGATCTCTTCATCTTCTTCGACATCCAGTTCCCCACCCGCCTCACAC
CCCAGAAGAAGCAGATGCTGCGCCAGGCATTGCTGACATGA

Translation (316 aa):
MGQDYYSVLGITRNSEDAQIKQAYRRLALKHHPLKSNEPSSAEIFRQIAEAYDVLSDPMKRGIYDKFGEE
GLKGGIPLEFGSQTPWTTGYVFHGKPEKVFHEFFGGNNPFSEFFDAEGSEVDLNFGGLQGRGVKKQDPQV
ERDLYLSLEDLFFGCTKKIKISRRVLNEDGYSSTIKDKILTIDVKPGWRQGTRITFEKEGDQGPNIIPAD
IIFIVKEKLHPRFRRENDNLFFVNPIPLGKALTCCTVEVRTLDDRLLNIPINDIIHPKYFKKVPGEGMPL
PEDPTKKGDLFIFFDIQFPTRLTPQKKQMLRQALLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH