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Report for CCDS58200.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58200.1 Public Homo sapiens 12 PRMT8 24 110 108 CCDS HistoryNCBI Gene:56341Re-query CCDS DB by CCDS ID:58200.1Re-query CCDS DB by GeneID:56341See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58200.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000452611.6 ENSP00000414507.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000452611.6Link to Ensembl Protein Viewer:ENSP00000414507.2Re-query CCDS DB by Nucleotide ID:ENST00000452611Re-query CCDS DB by Protein ID:ENSP00000414507
Original member Current member NCBI NM_001256536.1 NP_001243465.1 Accepted alive Link to Nucleotide Sequence:NM_001256536.1Link to Protein Sequence:NP_001243465.1Re-query CCDS DB by Nucleotide ID:NM_001256536Re-query CCDS DB by Protein ID:NP_001243465Link to BLAST:NP_001243465.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243465.1 385 Q9NR22-2 385 100% 0 0

Chromosomal Locations for CCDS 58200.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 3381395 3381442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3540606 3540791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3549936 3550091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3553651 3553714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3568706 3568848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3569477 3569564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3576871 3576986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3583058 3583208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3592231 3592352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3593099 3593182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGGAGTCTCTGGCTTCAGATGGATTCAAGCTGAAAGAGGTTTCTTCTGTGAACAGCCCCCCCTCCCAGC
CCCCCCAGCCCGTCGTCCCTGCTAAGCCCGTGCAATGCGTCCATCATGTGTCCACTCAACCCAGCTGCCC
AGGACGGGGCAAGATGTCCAAGCTGCTGAACCCAGAGGAGATGACCTCGAGAGATTATTACTTCGACTCC
TATGCCCACTTTGGGATCCACGAGGAAATGCTGAAGGATGAGGTGCGGACTCTCACTTACCGGAACTCCA
TGTACCACAACAAGCACGTGTTCAAGGACAAAGTGGTACTGGATGTGGGGAGTGGTACTGGGATCCTTTC
CATGTTCGCTGCCAAGGCAGGGGCCAAGAAGGTGTTTGGGATCGAATGCTCCAGTATTTCTGACTACTCA
GAGAAGATCATTAAGGCCAACCACTTGGACAACATCATCACCATATTTAAGGGTAAAGTGGAAGAGGTGG
AGCTGCCTGTGGAGAAGGTGGACATCATCATCAGCGAGTGGATGGGCTACTGTCTGTTCTATGAGTCCAT
GCTCAACACGGTGATCTTTGCCAGGGACAAGTGGCTGAAACCTGGAGGGCTTATGTTTCCAGACCGGGCA
GCTTTGTACGTGGTAGCGATTGAAGACAGACAGTACAAGGACTTCAAAATCCACTGGTGGGAGAATGTCT
ATGGCTTTGACATGACCTGCATCCGGGACGTGGCCATGAAGGAGCCTCTAGTGGACATCGTGGATCCAAA
GCAAGTGGTGACCAATGCCTGTTTGATAAAGGAGGTGGACATTTACACAGTGAAGACGGAAGAGCTATCG
TTCACATCTGCATTCTGCCTGCAGATACAGCGCAACGACTACGTCCACGCCCTGGTCACCTATTTTAATA
TTGAATTTACCAAGTGCCACAAGAAAATGGGGTTTTCCACAGCCCCTGATGCTCCCTACACCCACTGGAA
GCAGACCGTCTTCTACTTGGAAGATTACCTCACTGTCCGGAGGGGGGAGGAAATCTACGGGACCATATCC
ATGAAGCCAAATGCCAAAAATGTGCGAGACCTCGATTTCACAGTAGACTTGGATTTTAAGGGACAGCTGT
GTGAAACATCTGTATCTAATGACTACAAAATGCGTTAG

Translation (385 aa):
MESLASDGFKLKEVSSVNSPPSQPPQPVVPAKPVQCVHHVSTQPSCPGRGKMSKLLNPEEMTSRDYYFDS
YAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMFAAKAGAKKVFGIECSSISDYS
EKIIKANHLDNIITIFKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIFARDKWLKPGGLMFPDRA
ALYVVAIEDRQYKDFKIHWWENVYGFDMTCIRDVAMKEPLVDIVDPKQVVTNACLIKEVDIYTVKTEELS
FTSAFCLQIQRNDYVHALVTYFNIEFTKCHKKMGFSTAPDAPYTHWKQTVFYLEDYLTVRRGEEIYGTIS
MKPNAKNVRDLDFTVDLDFKGQLCETSVSNDYKMR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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