NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS58864.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58864.1 Public Homo sapiens 3 PEX5L 24 110 108 CCDS HistoryNCBI Gene:51555Re-query CCDS DB by CCDS ID:58864.1Re-query CCDS DB by GeneID:51555See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58864.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000472994.5 ENSP00000418054.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000472994.5Link to Ensembl Protein Viewer:ENSP00000418054.1Re-query CCDS DB by Nucleotide ID:ENST00000472994Re-query CCDS DB by Protein ID:ENSP00000418054
Original member Current member NCBI NM_001256753.2 NP_001243682.1 Accepted alive Link to Nucleotide Sequence:NM_001256753.2Link to Protein Sequence:NP_001243682.1Re-query CCDS DB by Nucleotide ID:NM_001256753Re-query CCDS DB by Protein ID:NP_001243682Link to BLAST:NP_001243682.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243682.1 567 Q8IYB4-4 567 100% 0 0

Chromosomal Locations for CCDS 58864.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 179801828 179802032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179807674 179807831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179808272 179808437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179809471 179809668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179811801 179811871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179815861 179816004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179819860 179819976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179859062 179859157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179874327 179874423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179875354 179875477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179879929 179880123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179887673 179887784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180036579 180036599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1704 nt):
ATGTACCAGGGACACATGCAGCTGGTGAATGAGCAACAAGAAAGCAGACCCCTCCTGAGTCCCTCCATCG
ATGACTTTCTCTGTGAAACCAAATCGGAAGCAATAGCAAGGCCAGTAACATCCAATACAGCTGTATTGAC
CACTGGCTTAGATCTCCTCGACCTGAGTGAACCAGTCTCTCAAACCCAAACCAAAGCCAAGAAGTCAGAG
CCCTCATCAAAAACCTCATCCCTCAAGAAAAAGGCCGATGGATCTGACCTCATCAGCACGGATGCTGAGC
AGAGAGGCCAGCCTCTCAGAGTCCCGGAGACTTCATCCTTAGATCTAGACATTCAAACACAACTGGAAAA
ATGGGACGATGTTAAGTTTCATGGAGATCGAAATACCAAGGGACATCCAATGGCAGAGAGAAAATCATCC
TCATCTAGAACTGGATCAAAAGAGCTCTTATGGTCCTCAGAACACAGATCTCAACCAGAACTGAGTGGTG
GAAAAAGCGCCCTCAACTCTGAGTCGGCTTCAGAATTGGAATTAGTGGCTCCGACTCAGGCTCGACTGAC
CAAAGAACATCGCTGGGGAAGCGCATTACTTTCTAGAAACCACTCCTTAGAAGAAGAGTTTGAAAGGGCA
AAAGCAGCAGTGGAGTCAGATACAGAGTTTTGGGATAAGATGCAAGCAGAATGGGAAGAAATGGCTCGGA
GGAACTGGATATCTGAGAACCAAGAAGCCCAGAACCAAGTAACCATCTCGGCTAGTGAGAAGGGATATTA
CTTTCACACTGAAAACCCCTTCAAGGACTGGCCTGGAGCATTTGAAGAAGGCTTAAAAAGGCTGAAGGAA
GGGGATCTGCCAGTCACCATCCTGTTCATGGAAGCAGCAATTCTTCAGGACCCTGGAGATGCAGAGGCAT
GGCAGTTCCTCGGGATAACCCAGGCGGAGAATGAAAATGAACAAGCAGCTATTGTCGCCCTCCAGAGGTG
CTTAGAATTACAGCCCAACAACTTAAAAGCTTTGATGGCCTTGGCTGTGAGTTATACTAACACTGGCCAT
CAGCAGGATGCCTGTGACGCTCTGAAGAATTGGATTAAGCAAAATCCAAAGTACAAATACCTTGTGAAAA
GCAAGAAGGGATCTCCAGGCCTCACCCGGCGGATGTCTAAGTCCCCAGTTGATAGCTCTGTTCTGGAAGG
GGTGAAGGAATTATATCTGGAAGCTGCCCACCAAAATGGAGATATGATCGACCCAGACCTGCAGACAGGT
CTAGGGGTTCTGTTCCACCTGAGTGGAGAATTTAATAGAGCAATAGATGCATTTAACGCTGCCTTAACTG
TTCGGCCAGAGGACTATTCACTATGGAACCGCCTCGGGGCGACCTTGGCGAACGGAGACCGCAGCGAGGA
AGCCGTGGAGGCCTATACGCGAGCACTGGAGATTCAGCCAGGATTCATCCGGTCCAGATACAACCTAGGA
ATAAGCTGCATCAACCTGGGCGCCTACAGAGAAGCGGTCAGCAATTTTCTCACTGCCCTCAGTTTGCAAA
GAAAGAGCAGGAATCAGCAGCAAGTTCCTCATCCTGCAATCTCTGGGAATATCTGGGCTGCCCTCAGAAT
TGCGCTCTCTCTGATGGACCAACCAGAACTCTTCCAGGCGGCTAATCTTGGTGACCTGGATGTCCTCTTA
AGAGCTTTCAACTTGGATCCTTGA

Translation (567 aa):
MYQGHMQLVNEQQESRPLLSPSIDDFLCETKSEAIARPVTSNTAVLTTGLDLLDLSEPVSQTQTKAKKSE
PSSKTSSLKKKADGSDLISTDAEQRGQPLRVPETSSLDLDIQTQLEKWDDVKFHGDRNTKGHPMAERKSS
SSRTGSKELLWSSEHRSQPELSGGKSALNSESASELELVAPTQARLTKEHRWGSALLSRNHSLEEEFERA
KAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTISASEKGYYFHTENPFKDWPGAFEEGLKRLKE
GDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTGH
QQDACDALKNWIKQNPKYKYLVKSKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG
LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLG
ISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLL
RAFNLDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH