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Report for CCDS35851.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35851.1 Public Mus musculus 10 Txlnb 23 108 98 CCDS HistoryNCBI Gene:378431Re-query CCDS DB by CCDS ID:35851.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35851.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037964.6 ENSMUSP00000044936.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037964.6Link to Ensembl Protein Viewer:ENSMUSP00000044936.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000037964Re-query CCDS DB by Protein ID:ENSMUSP00000044936
Original member Current member NCBI NM_138628.3 NP_619534.2 Accepted alive Link to Nucleotide Sequence:NM_138628.3Link to Protein Sequence:NP_619534.2Re-query CCDS DB by Nucleotide ID:NM_138628Re-query CCDS DB by Protein ID:NP_619534Link to BLAST:NP_619534.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_619534.2 685 Q8VBT1 685 100% 0 0

Chromosomal Locations for CCDS 35851.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 17799101 17799533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17806765 17806856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17815229 17815399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17827792 17827986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17830236 17830355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17833278 17833352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17838908 17839000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17841426 17841521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 17842698 17843480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2058 nt):
ATGGAGATTAATCATCCTGATCAGCTCTCAGTGGAGCACCCAACTCCCCCAGGGGACAGCTCATCACTCA
ATCAAAACGGCCCGGGAAAGCAAGATGGCGAGCGGTGCTCAACCTCAGGCCAAGCGCCAGAGCAAGAGGG
AAGCCTGCATCCCGAGAAGGGAGCCCATGATGTCGCGGAAGAGTTGAGCAGGCAACTGGAAGACATCATA
AGCACGTATGGGTCTGCTGCCAGTCCCCGAGGGAAGGAGAGCACCTCTGAAACTAAGGAGCAGCCCCCAA
ACACAGAGGCACCAGACAATGAGGATGTTGACTATGAAGAAACCACTGAAGAGATAGACAGAGAACCCAC
TGCTCCTGAAGAGCCAGCCGCAGCCAAAGAGCCTGTCAGCAATAAAGAGCAAAAGCTGGAAAAGAAAATC
TTAAAAGGATTAGGTAAAGAAGCTAACTTGCTCATGCAAAACCTGAACAAGCTGCAAGCACCTGAAGAAA
AGCTTGATTTTTTATTCAAGAAGTATACTGAATTGCTGGATGAACATCGCACCGAGCAAAAGAAACTGAA
GCTCCTACTGAAACAGCAGGCGCAGACCCAGAGAGAGAAGGACCAGTTGCAGAGTGAGCACAACAGAGCC
GTCCTTGCTCGAAGCAAACTCGAGAGTCTGTGTCGGGAGCTACAGAGGCACAACAAGACGCTGAAGGAAG
AAACCCTCCAACGGGCGCGCGAGGAAGAAGAGAAGAGGAAAGAGATCACAAGTCACTTTCAAACTACCCT
GACAGATATCCAGACTCAGATCGAACAACAGAGTGAGCGCAATATGAAGCTCTGCCAGGAGAACACAGAG
CTTGCAGAAAAACTGAAAAGCATCATTGACCAGTACGAGCTCAGAGAGGAGCATCTGGACAAAATATTCA
AACATCGAGAACTGCAGCAGAAGCTGGTGGATGCGAAACTTGAAGAGGCTCAAGAACTGATGCAGGAGGC
AGAGGAGCGGCACAGACGGGAGAAGGAATATTTGCTGAACCAGGCGGCAGAGTGGAAACTTCAGGCCAAA
GTGCTGAAGGAGCAGGAGACGGTGCTGCAGGCTCAGCTCACTCTCTACTCAGGAAGGTTTGAGGAGTTCC
AGAGTACACTGACAAAAAGCAATGAAGTGTTTGCCACTTTCAAGCAGGAAATGGATAAGACAACTAAGAA
AATGAAGAAGCTGGAGAAGGACACCGCCACGTGGAAAGCCCGATTTGAGAATTGTAACAAAGCCCTGTTG
GACATGATCGAAGAGAAAGCCCTGCGAGCTAAAGAATACGAGTGTTTCGTGATGAAAATCCAAAGGCTGG
AGAACCTGTGTCGTGCTTTACAAGAGGAGAGAAAGGAACTCTACAAGAAAATCAGAGAAGCAAAAATGTC
CGAAAAGGAAGACCAGGTTCAGCGCACCTCTGAGGAAGAGCCAGAGCCAAGCGTCTCTGAAAATGAAGAG
GTGGACGCAGAGGAAGCCAACAGTTTTCAAAAAGCTGTGGAAAACCTGGCCACAGCTTTTACCATCCTTC
ATCATCCAGAGTTCACCCCAGACCAACCAACGGAAAGACAGCTGGCAGTGAATGGTCCTCAAAGTGGAAG
TGATGTCACCCACCAGCACCCCGAAACAGCCCGTTTAAACCATCCCAGCCTTCCCGCTGATTCAGGGAGT
CCTCGGCCCCCTGTAGGTGCTCAGGCTGTGGCGGAGGGCGTCTGTGAGGCCACACCTGCCCCTACAGCCT
CCTGTACCCCTGCAGAGGCAGAGCTACAAAGTCAGGGTCTCCCTGCAGAAAATACCCCGGGTCCGAAGCC
CCATAAACCAGAGGCAAACACTTCTGGTCAGGCCCCACTGTCCCCAGCCCAGGGCTCCCTATCTGTAGTA
GAGGCAAAATATGATATTTCACCATCTCCAGAGAGTGAGGGAGATTCTGCTGTGGTGCCCGGCTGTGAGT
CTAGGGAGCAGCCCCCACCAGAAGTCACAGACATCCCCGTAGGCCCTTCCACTGGACTCCCCAGAGAGCC
CGATGCTTGTCTGAATGGAGTAGACTAA

Translation (685 aa):
MEINHPDQLSVEHPTPPGDSSSLNQNGPGKQDGERCSTSGQAPEQEGSLHPEKGAHDVAEELSRQLEDII
STYGSAASPRGKESTSETKEQPPNTEAPDNEDVDYEETTEEIDREPTAPEEPAAAKEPVSNKEQKLEKKI
LKGLGKEANLLMQNLNKLQAPEEKLDFLFKKYTELLDEHRTEQKKLKLLLKQQAQTQREKDQLQSEHNRA
VLARSKLESLCRELQRHNKTLKEETLQRAREEEEKRKEITSHFQTTLTDIQTQIEQQSERNMKLCQENTE
LAEKLKSIIDQYELREEHLDKIFKHRELQQKLVDAKLEEAQELMQEAEERHRREKEYLLNQAAEWKLQAK
VLKEQETVLQAQLTLYSGRFEEFQSTLTKSNEVFATFKQEMDKTTKKMKKLEKDTATWKARFENCNKALL
DMIEEKALRAKEYECFVMKIQRLENLCRALQEERKELYKKIREAKMSEKEDQVQRTSEEEPEPSVSENEE
VDAEEANSFQKAVENLATAFTILHHPEFTPDQPTERQLAVNGPQSGSDVTHQHPETARLNHPSLPADSGS
PRPPVGAQAVAEGVCEATPAPTASCTPAEAELQSQGLPAENTPGPKPHKPEANTSGQAPLSPAQGSLSVV
EAKYDISPSPESEGDSAVVPGCESREQPPPEVTDIPVGPSTGLPREPDACLNGVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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