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Report for CCDS8518.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8518.1 Public Homo sapiens 12 RHNO1 24 110 108 CCDS HistoryNCBI Gene:83695Re-query CCDS DB by CCDS ID:8518.1Re-query CCDS DB by GeneID:83695See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 8518.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000489288.7 ENSP00000438590.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000489288.7Link to Ensembl Protein Viewer:ENSP00000438590.1Re-query CCDS DB by Nucleotide ID:ENST00000489288Re-query CCDS DB by Protein ID:ENSP00000438590
Original member Current member EBI ENST00000618250.4 ENSP00000479598.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618250.4Link to Ensembl Protein Viewer:ENSP00000479598.1Re-query CCDS DB by Nucleotide ID:ENST00000618250Re-query CCDS DB by Protein ID:ENSP00000479598
Original member Current member NCBI NM_001252499.3 NP_001239428.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001252499.3Link to Protein Sequence:NP_001239428.1Re-query CCDS DB by Nucleotide ID:NM_001252499Re-query CCDS DB by Protein ID:NP_001239428Link to BLAST:NP_001239428.1
Original member Current member NCBI NM_001257097.2 NP_001244026.1 Accepted alive Link to Nucleotide Sequence:NM_001257097.2Link to Protein Sequence:NP_001244026.1Re-query CCDS DB by Nucleotide ID:NM_001257097Re-query CCDS DB by Protein ID:NP_001244026Link to BLAST:NP_001244026.1
Original member Current member NCBI NM_001257098.2 NP_001244027.1 Accepted alive Link to Nucleotide Sequence:NM_001257098.2Link to Protein Sequence:NP_001244027.1Re-query CCDS DB by Nucleotide ID:NM_001257098Re-query CCDS DB by Protein ID:NP_001244027Link to BLAST:NP_001244027.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239428.1 238 Q9BSD3-1 238 100% 0 0
NP_001244026.1 238 Q9BSD3-1 238 100% 0 0
NP_001244027.1 238 Q9BSD3-1 238 100% 0 0

Chromosomal Locations for CCDS 8518.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 2885367 2885534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 2887911 2888459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGCCTCCCAGAAAAAAACGCCGCCAGCCTTCCCAGAAAGCCCCGCTGCTGTTCCACCAACAACCACTGG
AGGGCCCCAAACACAGCTGTGCATCTACACAGCTTCCCATCACTCACACTCGACAGGTGCCCAGCAAGCC
CATTGACCACAGCACCATCACTTCCTGGGTATCACCTGATTTTGATACAGCAGCAGGAAGCTTGTTCCCA
GCCTACCAGAAACACCAAAACCGGGCGAGACACTCAAGTCGAAAACCTACCACCTCCAAGTTTCCACATC
TAACTTTTGAGAGTCCGCAATCTTCCAGTTCAGAGACATTGGGGATCCCCTTAATCCGAGAGTGCCCCAG
TGAATCAGAAAAGGATGTTTCCAGAAGACCCTTAGTTCCAGTGCTCAGTCCCCAAAGCTGTGGGAACATG
TCAGTGCAGGCACTTCAGAGCTTACCTTATGTGTTCATTCCACCTGATATCCAGACCCCAGAGTCATCGT
CTGTGAAGGAAGAACTCATTCCCCAAGATCAGAAGGAAAACAGCCTTCTAAGCTGCACTCTTCACACTGG
CACTCCTAATAGCCCAGAGCCTGGACCTGTTCTGGTTAAAGACACCCCCGAGGACAAGTATGGAATAAAG
GTCACATGGAGGAGACGACAGCACCTGCTTGCTTACCTCAGGGAGAGAGGGAAGCTGAGCAGAAGCCAAT
TCCTTGTGAAAAGCTGA

Translation (238 aa):
MPPRKKRRQPSQKAPLLFHQQPLEGPKHSCASTQLPITHTRQVPSKPIDHSTITSWVSPDFDTAAGSLFP
AYQKHQNRARHSSRKPTTSKFPHLTFESPQSSSSETLGIPLIRECPSESEKDVSRRPLVPVLSPQSCGNM
SVQALQSLPYVFIPPDIQTPESSSVKEELIPQDQKENSLLSCTLHTGTPNSPEPGPVLVKDTPEDKYGIK
VTWRRRQHLLAYLRERGKLSRSQFLVKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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