NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50896.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50896.1 Public Mus musculus 3 Gm5148 23 108 98 CCDS HistoryNCBI Gene:381438Re-query CCDS DB by CCDS ID:50896.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50896.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079755.4 ENSMUSP00000078691.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079755.4Link to Ensembl Protein Viewer:ENSMUSP00000078691.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000079755Re-query CCDS DB by Protein ID:ENSMUSP00000078691
Original member Current member EBI ENSMUST00000099128.1 ENSMUSP00000096731.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099128.1Link to Ensembl Protein Viewer:ENSMUSP00000096731.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099128Re-query CCDS DB by Protein ID:ENSMUSP00000096731
Original member Current member EBI ENSMUST00000108105.1 ENSMUSP00000103740.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108105.1Link to Ensembl Protein Viewer:ENSMUSP00000103740.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108105Re-query CCDS DB by Protein ID:ENSMUSP00000103740
Original member Current member NCBI NM_198657.2 NP_941059.1 Accepted alive Link to Nucleotide Sequence:NM_198657.2Link to Protein Sequence:NP_941059.1Re-query CCDS DB by Nucleotide ID:NM_198657Re-query CCDS DB by Protein ID:NP_941059Link to BLAST:NP_941059.1

Chromosomal Locations for CCDS 50896.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 37714605 37715069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (465 nt):
ATGACCTTTTCGACCAAATCCAGCAACCAGAACTTCATCATTTTCCTCAATGAAGTTCAGGCAGCCATCA
TTGGGCACGAACGCTGTGATCTTCTTCCCGTTCTTAATGAGCTGCACCCTGACGCACTTCCTGATGGCAG
AATTTGGCTGTTTGGCCTCAACCCCTACTTTTTCCAGCACAATTCCCTTTGCATGAGAGGCACCCCCAAA
CGGATTGGCCTTCAGGGCTGTGCCCAAGTGGGCTTTCTTGTACTGTTTGTCATGCCACTTCTGGTCCCGT
CGGTGACTGCGGAGCTTCCGGGCAGTTCGGAGACCACGACACTTGCCCATCTTGCCGGCGCCACGGGCCC
AAGAGAAAGCATTCCACCATGTCTTATGTGGAGTCTCACCAGCCATCTGCCAGTATACAATACATACAAT
ACAGCACCCTGCCTGTGGCCTTTTTCTCCCTCTCTTCAACATTGA

Translation (154 aa):
MTFSTKSSNQNFIIFLNEVQAAIIGHERCDLLPVLNELHPDALPDGRIWLFGLNPYFFQHNSLCMRGTPK
RIGLQGCAQVGFLVLFVMPLLVPSVTAELPGSSETTTLAHLAGATGPRESIPPCLMWSLTSHLPVYNTYN
TAPCLWPFSPSLQH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH