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Report for CCDS17541.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17541.1 Public Mus musculus 3 S100a7a 23 108 98 CCDS HistoryNCBI Gene:381493Re-query CCDS DB by CCDS ID:17541.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17541.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079286.3 ENSMUSP00000078268.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079286.3Link to Ensembl Protein Viewer:ENSMUSP00000078268.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000079286Re-query CCDS DB by Protein ID:ENSMUSP00000078268
Original member Current member NCBI NM_199422.1 NP_955454.1 Accepted alive Link to Nucleotide Sequence:NM_199422.1Link to Protein Sequence:NP_955454.1Re-query CCDS DB by Nucleotide ID:NM_199422Re-query CCDS DB by Protein ID:NP_955454Link to BLAST:NP_955454.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_955454.1 108 Q6S5I3 108 100% 0 0

Chromosomal Locations for CCDS 17541.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 90655508 90655657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90657650 90657826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (327 nt):
ATGCCAGACACACCAGTGGAGGACTCCCTCTTCCAAATCATACACTGCTTCCATCACTATGCTGCCCGGG
AAGGGGACAAGGAGACCTTGTCCCTGGAGGAGTTGAAAGCTCTGCTCTTGGATAGTGTGCCTCGCTTCAT
GGACACCTTGGGCCGCAGGCAGCCATACTACATCACAGAGCTGTTCCGGGCAGCTGACAAAAACAAGGAC
AACCAGATCTGCTTTGATGAGTTCCTGTACATCTTGGGCAAGCTGGTGAAGGACTACCATCTCCAGTTCC
ACCGGCAGTTGTGTGCACACTACTGTACTGAGCACAGCCTCTACTAG

Translation (108 aa):
MPDTPVEDSLFQIIHCFHHYAAREGDKETLSLEELKALLLDSVPRFMDTLGRRQPYYITELFRAADKNKD
NQICFDEFLYILGKLVKDYHLQFHRQLCAHYCTEHSLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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