NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS34680.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34680.1 Public Homo sapiens 7 SAMD9 24 110 108 CCDS HistoryNCBI Gene:54809Re-query CCDS DB by CCDS ID:34680.1Re-query CCDS DB by GeneID:54809See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34680.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379958.3 ENSP00000369292.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379958.3Link to Ensembl Protein Viewer:ENSP00000369292.2Re-query CCDS DB by Nucleotide ID:ENST00000379958Re-query CCDS DB by Protein ID:ENSP00000369292
Original member Current member EBI ENST00000620985.4 ENSP00000484636.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000620985.4Link to Ensembl Protein Viewer:ENSP00000484636.1Re-query CCDS DB by Nucleotide ID:ENST00000620985Re-query CCDS DB by Protein ID:ENSP00000484636
Original member Current member NCBI NM_001193307.2 NP_001180236.1 Accepted alive Link to Nucleotide Sequence:NM_001193307.2Link to Protein Sequence:NP_001180236.1Re-query CCDS DB by Nucleotide ID:NM_001193307Re-query CCDS DB by Protein ID:NP_001180236Link to BLAST:NP_001180236.1
Original member Current member NCBI NM_017654.4 NP_060124.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017654.4Link to Protein Sequence:NP_060124.2Re-query CCDS DB by Nucleotide ID:NM_017654Re-query CCDS DB by Protein ID:NP_060124Link to BLAST:NP_060124.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180236.1 1589 Q5K651 1589 100% 0 0
NP_060124.2 1589 Q5K651 1589 100% 0 0

Chromosomal Locations for CCDS 34680.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 93101328 93106097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4770 nt):
ATGGCAAAGCAACTTAACCTTCCAGAAAATACAGATGATTGGACAAAAGAGGATGTAAATCAGTGGTTAG
AAAGTCATAAGATTGACCAAAAACACAGGGAAATTTTGACTGAACAAGACGTGAATGGAGCAGTCTTGAA
GTGGTTAAAAAAAGAACATCTTGTTGATATGGGCATCACACATGGACCAGCTATTCAAATAGAAGAACTA
TTCAAAGAATTGCGGAAAACAGCCATTGAAGATTCGATTCAGACATCTAAGATGGGAAAGCCCAGTAAAA
ATGCTCCTAAAGACCAAACTGTGTCTCAAAAGGAACGTAGAGAAACTTCAAAGCAAAAACAAAAGGGTAA
AGAGAACCCAGATATGGCTAATCCGTCTGCAATGAGTACAACTGCTAAAGGTTCTAAGTCACTAAAAGTT
GAGCTCATAGAAGATAAAATAGATTATACAAAGGAAAGGCAACCATCCATAGACCTGACATGTGTATCAT
ATCCATTTGATGAATTCAGTAATCCATATCGTTACAAGTTGGATTTTAGTCTACAGCCTGAAACAGGACC
AGGCAATCTCATTGATCCGATACATGAATTCAAAGCCTTCACAAATACAGCAACAGCCACAGAAGAGGAT
GTCAAGATGAAATTTAGCAATGAGGTTTTCCGATTTGCTTCAGCTTGTATGAATTCACGTACCAATGGCA
CTATTCATTTTGGAGTCAAAGACAAACCCCATGGGAAAATTGTTGGCATCAAAGTCACCAATGATACCAA
GGAAGCCCTCATTAACCATTTCAATCTGATGATAAACAAGTATTTTGAAGACCATCAAGTCCAACAAGCA
AAGAAGTGCATTCGAGAGCCAAGATTTGTGGAAGTTTTACTGCCAAATAGTACTCTATCTGACAGATTTG
TTATTGAAGTGGACATTATTCCACAGTTCTCTGAATGCCAATATGATTATTTCCAGATTAAAATGCAAAA
TTACAACAACAAAATATGGGAACAAAGTAAAAAATTCTCACTATTTGTGCGAGATGGGACCAGCTCTAAG
GACATTACGAAAAATAAAGTTGATTTCAGAGCATTTAAAGCAGATTTTAAAACACTGGCAGAGTCCAGAA
AAGCAGCAGAAGAAAAATTCAGAGCAAAAACAAATAAAAAAGAAAGAGAGGGACCAAAGTTGGTTAAATT
ATTGACAGGAAATCAAGATTTGTTAGATAATTCATACTATGAACAGTACATTCTTGTAACAAATAAATGC
CACCCAGATCAAACAAAACACTTAGATTTCCTGAAGGAAATTAAATGGTTTGCTGTATTGGAGTTTGATC
CTGAGTCTAACATCAATGGAGTGGTCAAAGCTTACAAAGAAAGCCGAGTAGCAAACCTTCACTTTCCAAG
TGTATATGTAGAACAGAAAACCACACCAAATGAGACGATTTCTACTCTAAATCTTTACCATCAACCCAGC
TGGATTTTCTGCAATGGCAGGTTAGACCTTGACAGTGAAAAATATAAACCCTTTGATCCAAGTTCCTGGC
AAAGAGAAAGAGCTTCTGATGTCAGGAAACTGATTTCATTTCTTACACATGAAGACATAATGCCAAGAGG
GAAGTTTTTGGTGGTATTTCTATTACTGTCCTCTGTGGATGACCCAAGAGATCCCCTCATTGAGACTTTC
TGTGCTTTCTACCAGGATCTCAAAGGAATGGAAAATATACTGTGTATTTGTGTGCACCCACACATATTTC
AGGGATGGAAAGATCTACTTGAAGCAAGATTAATAAAACACCAAGATGAAATTTCAAGCCAATGTATTTC
TGCTTTAAGCCTTGAAGAGATCAATGGCACTATTCTTAAACTAAAATCTGTGACTCAATCTTCAAAAAGG
CTTTTGCCATCTATTGGTTTATCGACTGTCCTTCTGAAAAAGGAAGAAGATATCATGACTGCTCTGGAAA
TTATCTGTGAAAATGAATGTGAGGGTACACTGTTAGAGAAGGACAAAAATAAATTCCTTGAATTCAAGGC
ATCAAAAGAGGAAGACTTCTATCGAGGTGGCAAAGTGTCATGGTGGAACTTCTACTTCTCTTCTGAAAGT
TATTCTTCACCTTTTGTCAAAAGGGATAAATATGAAAGACTTGAAGCAATGATTCAAAACTGTGCAGATT
CTTCTAAACCAACAAGTACCAAAATTATTCATCTGTATCATCATCCAGGCTGTGGGGGAACTACCTTGGC
TATGCACATTCTCTGGGAACTAAGGAAGAAATTCAGATGTGCTGTGCTGAAAAACAAGACAGTGGATTTT
TCTGAAATTGGAGAACAGGTAACCAGTTTAATCACCTATGGGGCAATGAACCGTCAGGAATACGTACCTG
TACTACTCCTTGTTGATGATTTTGAAGAACAAGATAATGTCTATCTTCTGCAGTACTCTATTCAAACAGC
TATAGCTAAAAAGTACATTCGATATGAAAAACCTCTGGTGATTATCCTAAATTGTATGAGATCACAAAAT
CCTGAAAAAAGTGCAAGGATCCCAGACAGTATTGCCGTAATACAGCAACTCTCTCCCAAAGAACAGAGAG
CTTTTGAGCTTAAATTGAAAGAAATCAAAGAACAGCATAAAAACTTTGAGGATTTTTATTCCTTTATGAT
CATGAAAACCAATTTTAATAAAGAATACATAGAAAATGTGGTCCGGAATATCCTGAAAGGGCAGAATATT
TTCACCAAGGAAGCAAAGCTCTTTTCTTTTCTGGCTCTTCTTAATTCATATGTGCCTGATACCACCATTT
CACTATCACAGTGTGAAAAATTCTTAGGAATTGGAAACAAGAAGGCTTTCTGGGGGACAGAAAAATTTGA
AGACAAGATGGGCACCTACTCTACAATTCTGATAAAAACAGAGGTCATCGAATGTGGGAACTACTGTGGA
GTACGCATCATTCACTCTTTGATTGCAGAGTTCTCACTGGAAGAATTGAAGAAAAGCTATCACCTGAATA
AAAGTCAAATTATGTTGGATATGCTAACTGAGAATTTGTTCTTCGATACTGGTATGGGAAAAAGTAAATT
TTTGCAAGATATGCACACACTCCTACTCACAAGACACCGCGATGAACATGAAGGTGAAACAGGAAATTGG
TTTTCCCCATTTATTGAAGCATTACATAAAGATGAAGGAAATGAAGCAGTTGAAGCTGTATTGCTTGAAA
GTATCCATCGGTTCAACCCAAATGCATTCATTTGCCAAGCGTTGGCAAGACATTTCTACATTAAAAAGAA
GGACTTTGGCAATGCTCTAAACTGGGCAAAACAAGCAAAAATCATAGAACCTGACAATTCTTATATCTCA
GATACACTGGGTCAAGTCTACAAAAGTAAAATAAGATGGTGGATAGAGGAAAACGGAGGAAACGGGAACA
TTTCAGTTGATGATCTAATTGCTCTTTTGGATTTAGCAGAACATGCCTCAAGTGCATTCAAAGAATCTCA
ACAGCAAAGTGAAGATAGAGAGTATGAAGTGAAGGAAAGATTGTATCCGAAGTCAAAAAGGCGGTATGAT
ACTTACAATATAGCTGGTTATCAAGGAGAGATAGAAGTTGGGCTTTACACAATCCAAATTCTCCAGCTCA
TTCCTTTTTTTGATAATAAAAATGAGCTATCTAAAAGATATATGGTCAATTTTGTATCAGGAAGTAGTGA
TATTCCAGGGGATCCAAACAATGAATATAAATTAGCCCTCAAAAACTATATTCCTTATTTAACTAAATTG
AAATTTTCTTTGAAAAAGTCCTTTGATTTTTTTGATGAATACTTTGTCCTGCTAAAACCCAGGAACAATA
TTAAGCAAAATGAAGAGGCCAAAACTCGGAGAAAGGTGGCTGGATATTTTAAGAAATATGTAGATATATT
TTGTCTCTTAGAAGAATCACAAAACAACACAGGTCTTGGATCAAAGTTCAGTGAGCCACTTCAAGTAGAG
AGATGCAGGAGAAACCTAGTAGCTTTAAAAGCAGACAAGTTTTCTGGGCTCTTGGAATATCTTATCAAAA
GTCAAGAGGATGCTATAAGCACTATGAAATGTATAGTGAACGAATATACTTTTCTCTTAGAACAATGCAC
TGTCAAAATCCAGTCAAAAGAAAAGCTAAATTTCATCTTGGCCAACATTATTCTCTCCTGTATCCAACCT
ACCTCCAGATTAGTAAAGCCAGTTGAAAAACTAAAAGATCAGCTTCGAGAAGTCTTGCAACCAATAGGAC
TGACTTATCAGTTTTCAGAACCGTATTTTCTAGCTTCCCTCTTATTCTGGCCAGAAAATCAACAACTAGA
TCAACATTCTGAACAAATGAAAGAGTATGCTCAAGCACTAAAAAATTCTTTCAAGGGGCAATATAAACAT
ATGCATCGTACAAAGCAACCAATTGCATATTTCTTTCTTGGAAAAGGTAAAAGACTGGAAAGACTTGTTC
ACAAAGGAAAAATTGACCAGTGCTTTAAGAAGACACCAGATATTAATTCCTTGTGGCAGAGTGGAGATGT
GTGGAAGGAGGAAAAAGTCCAAGAACTTTTGCTTCGTTTACAAGGTCGAGCTGAAAACAATTGTTTATAT
ATAGAATATGGAATCAATGAAAAAATCACAATACCCATCACTCCCGCTTTTTTAGGTCAACTTAGAAGTG
GCAGAAGCATAGAGAAGGTGTCTTTTTACCTGGGATTTTCCATTGGAGGCCCACTTGCTTATGACATTGA
AATTGTTTAA

Translation (1589 aa):
MAKQLNLPENTDDWTKEDVNQWLESHKIDQKHREILTEQDVNGAVLKWLKKEHLVDMGITHGPAIQIEEL
FKELRKTAIEDSIQTSKMGKPSKNAPKDQTVSQKERRETSKQKQKGKENPDMANPSAMSTTAKGSKSLKV
ELIEDKIDYTKERQPSIDLTCVSYPFDEFSNPYRYKLDFSLQPETGPGNLIDPIHEFKAFTNTATATEED
VKMKFSNEVFRFASACMNSRTNGTIHFGVKDKPHGKIVGIKVTNDTKEALINHFNLMINKYFEDHQVQQA
KKCIREPRFVEVLLPNSTLSDRFVIEVDIIPQFSECQYDYFQIKMQNYNNKIWEQSKKFSLFVRDGTSSK
DITKNKVDFRAFKADFKTLAESRKAAEEKFRAKTNKKEREGPKLVKLLTGNQDLLDNSYYEQYILVTNKC
HPDQTKHLDFLKEIKWFAVLEFDPESNINGVVKAYKESRVANLHFPSVYVEQKTTPNETISTLNLYHQPS
WIFCNGRLDLDSEKYKPFDPSSWQRERASDVRKLISFLTHEDIMPRGKFLVVFLLLSSVDDPRDPLIETF
CAFYQDLKGMENILCICVHPHIFQGWKDLLEARLIKHQDEISSQCISALSLEEINGTILKLKSVTQSSKR
LLPSIGLSTVLLKKEEDIMTALEIICENECEGTLLEKDKNKFLEFKASKEEDFYRGGKVSWWNFYFSSES
YSSPFVKRDKYERLEAMIQNCADSSKPTSTKIIHLYHHPGCGGTTLAMHILWELRKKFRCAVLKNKTVDF
SEIGEQVTSLITYGAMNRQEYVPVLLLVDDFEEQDNVYLLQYSIQTAIAKKYIRYEKPLVIILNCMRSQN
PEKSARIPDSIAVIQQLSPKEQRAFELKLKEIKEQHKNFEDFYSFMIMKTNFNKEYIENVVRNILKGQNI
FTKEAKLFSFLALLNSYVPDTTISLSQCEKFLGIGNKKAFWGTEKFEDKMGTYSTILIKTEVIECGNYCG
VRIIHSLIAEFSLEELKKSYHLNKSQIMLDMLTENLFFDTGMGKSKFLQDMHTLLLTRHRDEHEGETGNW
FSPFIEALHKDEGNEAVEAVLLESIHRFNPNAFICQALARHFYIKKKDFGNALNWAKQAKIIEPDNSYIS
DTLGQVYKSKIRWWIEENGGNGNISVDDLIALLDLAEHASSAFKESQQQSEDREYEVKERLYPKSKRRYD
TYNIAGYQGEIEVGLYTIQILQLIPFFDNKNELSKRYMVNFVSGSSDIPGDPNNEYKLALKNYIPYLTKL
KFSLKKSFDFFDEYFVLLKPRNNIKQNEEAKTRRKVAGYFKKYVDIFCLLEESQNNTGLGSKFSEPLQVE
RCRRNLVALKADKFSGLLEYLIKSQEDAISTMKCIVNEYTFLLEQCTVKIQSKEKLNFILANIILSCIQP
TSRLVKPVEKLKDQLREVLQPIGLTYQFSEPYFLASLLFWPENQQLDQHSEQMKEYAQALKNSFKGQYKH
MHRTKQPIAYFFLGKGKRLERLVHKGKIDQCFKKTPDINSLWQSGDVWKEEKVQELLLRLQGRAENNCLY
IEYGINEKITIPITPAFLGQLRSGRSIEKVSFYLGFSIGGPLAYDIEIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH