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Report for CCDS35308.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35308.1 Public Homo sapiens X FOXR2 24 110 108 CCDS HistoryNCBI Gene:139628Re-query CCDS DB by CCDS ID:35308.1Re-query CCDS DB by GeneID:139628See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35308.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339140.5 ENSP00000427329.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000339140.5Link to Ensembl Protein Viewer:ENSP00000427329.2Re-query CCDS DB by Nucleotide ID:ENST00000339140Re-query CCDS DB by Protein ID:ENSP00000427329
Original member Current member NCBI NM_198451.4 NP_940853.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198451.4Link to Protein Sequence:NP_940853.1Re-query CCDS DB by Nucleotide ID:NM_198451Re-query CCDS DB by Protein ID:NP_940853Link to BLAST:NP_940853.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940853.1 311 Q6PJQ5 311 100% 0 0

Chromosomal Locations for CCDS 35308.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 55623712 55624647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGACTTAAAACTAAAAGACTGTGAATTTTGGTATAGTCTCCATGGCCAGGTCCCAGGGCTGCTGGACT
GGGACATGAGGAATGAGTTATTTCTGCCTTGTACCACAGACCAGTGCTCTTTAGCTGAGCAAATCCTTGC
CAAATACAGAGTCGGAGTAATGAAGCCCCCAGAAATGCCTCAGAAGAGGAGACCCAGTCCTGATGGAGAT
GGTCCTCCCTGTGAACCCAATCTGTGGATGTGGGTGGACCCCAATATCCTGTGCCCCCTTGGCAGCCAGG
AGGCCCCAAAGCCCAGTGGAAAAGAGGATCTGACAAACATTTCTCCTTTCCCTCAGCCCCCACAAAAAGA
CGAAGGGTCTAACTGCTCAGAGGACAAAGTGGTAGAGTCTCTGCCATCTTCCTCCAGTGAGCAGTCTCCT
TTACAGAAGCAGGGTATCCATTCCCCCAGTGACTTTGAGCTCACAGAAGAGGAGGCTGAGGAACCAGACG
ACAACTCCCTCCAGTCCCCTGAAATGAAATGTTACCAGAGCCAGAAACTATGGCAAATCAACAACCAAGA
GAAGTCCTGGCAAAGGCCCCCTCTCAATTGTAGCCACCTTATTGCCCTAGCATTAAGAAACAACCCCCAC
TGTGGCCTCAGTGTGCAGGAGATCTACAATTTCACCCGACAGCATTTCCCCTTTTTCTGGACAGCTCCGG
ATGGCTGGAAGAGCACCATTCATTACAACCTCTGCTTCCTGGACAGCTTTGAGAAGGTGCCAGACAGCCT
TAAGGATGAAGATAATGCAAGACCTCGCTCTTGCCTTTGGAAGCTCACTAAGGAGGGGCACCGCCGCTTT
TGGGAGGAGACTCGTGTCTTAGCCTTTGCTCAAAGGGAGAGAATCCAAGAGTGCATGAGTCAGCCAGAGT
TGTTGACCTCTCTCTTTGATCTTTGA

Translation (311 aa):
MDLKLKDCEFWYSLHGQVPGLLDWDMRNELFLPCTTDQCSLAEQILAKYRVGVMKPPEMPQKRRPSPDGD
GPPCEPNLWMWVDPNILCPLGSQEAPKPSGKEDLTNISPFPQPPQKDEGSNCSEDKVVESLPSSSSEQSP
LQKQGIHSPSDFELTEEEAEEPDDNSLQSPEMKCYQSQKLWQINNQEKSWQRPPLNCSHLIALALRNNPH
CGLSVQEIYNFTRQHFPFFWTAPDGWKSTIHYNLCFLDSFEKVPDSLKDEDNARPRSCLWKLTKEGHRRF
WEETRVLAFAQRERIQECMSQPELLTSLFDL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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