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Report for CCDS21876.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21876.1 Public Mus musculus 7 Ctf2 23 108 98 CCDS HistoryNCBI Gene:244218Re-query CCDS DB by CCDS ID:21876.1Re-query CCDS DB by GeneID:244218See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21876.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076091.3 ENSMUSP00000075459.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076091.3Link to Ensembl Protein Viewer:ENSMUSP00000075459.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000076091Re-query CCDS DB by Protein ID:ENSMUSP00000075459
Original member Current member NCBI NM_198858.1 NP_942155.1 Accepted alive Link to Nucleotide Sequence:NM_198858.1Link to Protein Sequence:NP_942155.1Re-query CCDS DB by Nucleotide ID:NM_198858Re-query CCDS DB by Protein ID:NP_942155Link to BLAST:NP_942155.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_942155.1 204 P83714 204 100% 0 0

Chromosomal Locations for CCDS 21876.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 127719211 127719669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127723136 127723275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127725567 127725582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGTACTGCCTGCTGGCAACTCCCCTATGCCTACTGAGCCTGCTGTTGCCACCCCTCAGTCCTGCGGCCC
CCATCTCCCCATCAGAGCCCATCGGTCAAGCCTACAGCCTGGCTCTCTACATGCAGAAGAACACGTCAGC
ACTGCTGCAGACCTATCTCCAACACCAGGGCAGCCCCTTCAGTGACCCCGGCTTCTCAGCTCCTGAGCTC
CAGCTCAGCACCCTGCCTTCTGCAGCTGTCTCCTTCAAGACCTGGCATGCCATGGAAGATGCAGAACGGC
TAAGCCGAGCCCAGGGAGCCTTCCTGGCCTTGACCCAGCACCTCCAGCTCGTGGGGGACGACCAGAGTTA
TCTGAATCCTGGCAGTCCTATCCTGCTGGCCCAGCTAGGAGCAGCAAGACTCAGGGCCCAAGGCCTCTTG
GGCAACATGGCTGCTATCATGACTGCTCTAGGGCTGCCCATCCCTCCAGAAGAGGATACTCTGGGGTTTG
TCCCTTTTGGGGCCTCAGCCTTTGAGAGGAAATGCAGAGGCTACATAGTGACCCGAGAATATGGTCACTG
GACAGACCGGGCTGTGAGGGACTTGGCTCTCCTCAAGGCTAAGTACTCAGCATAG

Translation (204 aa):
MYCLLATPLCLLSLLLPPLSPAAPISPSEPIGQAYSLALYMQKNTSALLQTYLQHQGSPFSDPGFSAPEL
QLSTLPSAAVSFKTWHAMEDAERLSRAQGAFLALTQHLQLVGDDQSYLNPGSPILLAQLGAARLRAQGLL
GNMAAIMTALGLPIPPEEDTLGFVPFGASAFERKCRGYIVTREYGHWTDRAVRDLALLKAKYSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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