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Report for CCDS90798.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90798.1 Public Mus musculus Y Srsy 23 108 98 CCDS HistoryNCBI Gene:385550Re-query CCDS DB by CCDS ID:90798.1See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 90798.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179900.1 ENSMUSP00000136342.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179900.1Link to Ensembl Protein Viewer:ENSMUSP00000136342.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179900Re-query CCDS DB by Protein ID:ENSMUSP00000136342
Original member Current member NCBI NM_001371109.1 NP_001358038.1 Accepted alive Link to Nucleotide Sequence:NM_001371109.1Link to Protein Sequence:NP_001358038.1Re-query CCDS DB by Nucleotide ID:NM_001371109Re-query CCDS DB by Protein ID:NP_001358038Link to BLAST:NP_001358038.1

Chromosomal Locations for CCDS 90798.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome Y (NC_000087.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 17936149 17936691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGACTAACATAAACTTCGCCACTTCTGATTCTGCTAAAGGAGCCTGCAGATGCTCACCATCTCATGAGG
TGGGCCTCAGAAGTCCCCTACCAAGCCAAGGCATTCACAGACCATCTAAGTCTACTGAAACCCCATCAGA
AAAAGCCCCTTCTGACCAATGGGACACCAAAGCTTCCAATTCAGAGCATGAGGTTGACAAGCCATCTTCC
ATCCTTACAGAAGAGTTCATGCGAACCACTCTTTCTCATGAAGACAGCCTCAGGCATCACACCTTCCTCA
TGAGATTCCCAGACACGCTACTTCTACCAAAAGAAAACAGAGGAAAGCCTCTGTTTCCCAAGGAGCCCTG
CAAACTTCCCCTACAGATCAAGAATGCATTGAGTCATCTCCAGATGGAGACAGTCCCCATAGAGGTGTGC
AACACTCATCATCACCGCAAGAGGATATCAGCCATTCTTTTTCTACTAAGGAGGACTCAAAACATATTCC
TAATGTCCAAGAGGGAGAGACAACTTCCAGAAGTGCAAAACGGGAGCCCATAG

Translation (180 aa):
MTNINFATSDSAKGACRCSPSHEVGLRSPLPSQGIHRPSKSTETPSEKAPSDQWDTKASNSEHEVDKPSS
ILTEEFMRTTLSHEDSLRHHTFLMRFPDTLLLPKENRGKPLFPKEPCKLPLQIKNALSHLQMETVPIEVC
NTHHHRKRISAILFLLRRTQNIFLMSKRERQLPEVQNGSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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