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Report for CCDS8677.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8677.1 Public Homo sapiens 12 MGST1 24 110 108 CCDS HistoryNCBI Gene:4257Re-query CCDS DB by CCDS ID:8677.1Re-query CCDS DB by GeneID:4257See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8677.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000010404.6 ENSP00000010404.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000010404.6Link to Ensembl Protein Viewer:ENSP00000010404.2Re-query CCDS DB by Nucleotide ID:ENST00000010404Re-query CCDS DB by Protein ID:ENSP00000010404
Original member Current member EBI ENST00000396207.1 ENSP00000379510.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396207.1Link to Ensembl Protein Viewer:ENSP00000379510.1Re-query CCDS DB by Nucleotide ID:ENST00000396207Re-query CCDS DB by Protein ID:ENSP00000379510
Original member Current member EBI ENST00000396209.5 ENSP00000379512.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396209.5Link to Ensembl Protein Viewer:ENSP00000379512.1Re-query CCDS DB by Nucleotide ID:ENST00000396209Re-query CCDS DB by Protein ID:ENSP00000379512
Original member Current member EBI ENST00000396210.8 ENSP00000379513.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396210.8Link to Ensembl Protein Viewer:ENSP00000379513.3Re-query CCDS DB by Nucleotide ID:ENST00000396210Re-query CCDS DB by Protein ID:ENSP00000379513
Original member Current member NCBI NM_001260511.2 NP_001247440.1 Accepted alive Link to Nucleotide Sequence:NM_001260511.2Link to Protein Sequence:NP_001247440.1Re-query CCDS DB by Nucleotide ID:NM_001260511Re-query CCDS DB by Protein ID:NP_001247440Link to BLAST:NP_001247440.1
Original member Current member NCBI NM_020300.5 NP_064696.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020300.5Link to Protein Sequence:NP_064696.1Re-query CCDS DB by Nucleotide ID:NM_020300Re-query CCDS DB by Protein ID:NP_064696Link to BLAST:NP_064696.1
Original member Current member NCBI NM_145764.3 NP_665707.1 Accepted alive Link to Nucleotide Sequence:NM_145764.3Link to Protein Sequence:NP_665707.1Re-query CCDS DB by Nucleotide ID:NM_145764Re-query CCDS DB by Protein ID:NP_665707Link to BLAST:NP_665707.1
Original member Current member NCBI NM_145791.3 NP_665734.1 Accepted alive Link to Nucleotide Sequence:NM_145791.3Link to Protein Sequence:NP_665734.1Re-query CCDS DB by Nucleotide ID:NM_145791Re-query CCDS DB by Protein ID:NP_665734Link to BLAST:NP_665734.1
Original member Current member NCBI NM_145792.3 NP_665735.1 Accepted alive Link to Nucleotide Sequence:NM_145792.3Link to Protein Sequence:NP_665735.1Re-query CCDS DB by Nucleotide ID:NM_145792Re-query CCDS DB by Protein ID:NP_665735Link to BLAST:NP_665735.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001247440.1 155 P10620-1 155 100% 0 0
NP_064696.1 155 P10620-1 155 100% 0 0
NP_665707.1 155 P10620-1 155 100% 0 0
NP_665734.1 155 P10620-1 155 100% 0 0
NP_665735.1 155 P10620-1 155 100% 0 0

Chromosomal Locations for CCDS 8677.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 16354253 16354378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16357605 16357699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16363795 16364041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (468 nt):
ATGGTTGACCTCACCCAGGTAATGGATGATGAAGTATTCATGGCTTTTGCATCCTATGCAACAATTATTC
TTTCAAAAATGATGCTTATGAGTACTGCAACTGCATTCTATAGATTGACAAGAAAGGTTTTTGCCAATCC
AGAAGACTGTGTAGCATTTGGCAAAGGAGAAAATGCCAAGAAGTATCTTCGAACAGATGACAGAGTAGAA
CGTGTACGCAGAGCCCACCTGAATGACCTTGAAAATATTATTCCATTTCTTGGAATTGGCCTCCTGTATT
CCTTGAGTGGTCCCGACCCCTCTACAGCCATCCTGCACTTCAGACTATTTGTCGGAGCACGGATCTACCA
CACCATTGCATATTTGACACCCCTTCCCCAGCCAAATAGAGCTTTGAGTTTTTTTGTTGGATATGGAGTT
ACTCTTTCCATGGCTTACAGGTTGCTGAAAAGTAAATTGTACCTGTAA

Translation (155 aa):
MVDLTQVMDDEVFMAFASYATIILSKMMLMSTATAFYRLTRKVFANPEDCVAFGKGENAKKYLRTDDRVE
RVRRAHLNDLENIIPFLGIGLLYSLSGPDPSTAILHFRLFVGARIYHTIAYLTPLPQPNRALSFFVGYGV
TLSMAYRLLKSKLYL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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