NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS73952.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73952.1 Public Homo sapiens 17 C17orf100 24 110 108 CCDS HistoryNCBI Gene:388327Re-query CCDS DB by CCDS ID:73952.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73952.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000542475.3 ENSP00000491070.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000542475.3Link to Ensembl Protein Viewer:ENSP00000491070.1Re-query CCDS DB by Nucleotide ID:ENST00000542475Re-query CCDS DB by Protein ID:ENSP00000491070
Original member Current member EBI ENST00000635042.1 ENSP00000491523.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000635042.1Link to Ensembl Protein Viewer:ENSP00000491523.1Re-query CCDS DB by Nucleotide ID:ENST00000635042Re-query CCDS DB by Protein ID:ENSP00000491523
Original member Current member NCBI NM_001105520.2 NP_001098990.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001105520.2Link to Protein Sequence:NP_001098990.1Re-query CCDS DB by Nucleotide ID:NM_001105520Re-query CCDS DB by Protein ID:NP_001098990Link to BLAST:NP_001098990.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001098990.1 118 A8MU93 118 100% 0 0

Chromosomal Locations for CCDS 73952.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 6651914 6652270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (357 nt):
ATGGCCTCAGCCCGAGGGGCCAAGCAGTCTTCGCCCCGGGTGGGGACCACCCGCTACACAGAGACGTCCA
CGGTCCGCGTGGAGACCTCGTCCCACCGCGTGGAGACGTCGTCCCGGCGGGTGGAGACCTCCCAGCGCCG
CAGCGAGGGGCCCTCCCTCTCCCCCTCGGGGAAGCGGCTCCCTCGCATCCTCGAGGCGTCCTCCCGGCAC
GTGGAATCCTCCTCGCAGCGCACGGAAACGACCTCCCGCCACGTCAGAGCCTCGTCCCTGAGGGTGGAGA
CGTCTCTGCACTGCGCGGAGAGCCCGACCCCGCGGGCCAAGCCGGCCGCCCGCCAGAACGAAAAAACGGC
CCGATGA

Translation (118 aa):
MASARGAKQSSPRVGTTRYTETSTVRVETSSHRVETSSRRVETSQRRSEGPSLSPSGKRLPRILEASSRH
VESSSQRTETTSRHVRASSLRVETSLHCAESPTPRAKPAARQNEKTAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH