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Report for CCDS30799.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30799.1 Public Homo sapiens 1 SLC6A17 24 110 108 CCDS HistoryNCBI Gene:388662Re-query CCDS DB by CCDS ID:30799.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30799.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331565.5 ENSP00000330199.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000331565.5Link to Ensembl Protein Viewer:ENSP00000330199.3Re-query CCDS DB by Nucleotide ID:ENST00000331565Re-query CCDS DB by Protein ID:ENSP00000330199
Original member Current member NCBI NM_001010898.4 NP_001010898.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001010898.4Link to Protein Sequence:NP_001010898.1Re-query CCDS DB by Nucleotide ID:NM_001010898Re-query CCDS DB by Protein ID:NP_001010898Link to BLAST:NP_001010898.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010898.1 727 Q9H1V8 727 100% 0 0

Chromosomal Locations for CCDS 30799.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 110166930 110167215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110172060 110172217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110173973 110174099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110174779 110174960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110176629 110176739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110191972 110192213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110192506 110192698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110194579 110194771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110195586 110195745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110197437 110197599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110198076 110198444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2184 nt):
ATGCCGAAGAACAGCAAAGTGACCCAGCGTGAGCACAGCAGTGAGCATGTCACTGAGTCCGTGGCCGACC
TGCTGGCCCTCGAGGAGCCTGTGGACTATAAGCAGAGTGTACTGAATGTGGCTGGTGAGGCAGGCGGCAA
GCAGAAGGCGGTGGAGGAGGAGCTGGATGCAGAGGACCGGCCGGCCTGGAACAGTAAGCTGCAGTACATC
CTGGCCCAGATTGGCTTCTCTGTGGGCCTCGGCAACATCTGGAGGTTCCCCTACCTGTGCCAGAAAAATG
GAGGAGGTGCTTACCTGGTGCCCTACCTGGTGCTGCTGATCATCATCGGGATCCCCCTCTTCTTCCTGGA
GCTGGCTGTGGGTCAGAGGATCCGCCGCGGCAGCATCGGTGTGTGGCACTATATATGTCCCCGCCTGGGG
GGCATCGGCTTCTCCAGCTGCATAGTCTGTCTCTTTGTGGGGCTGTATTATAATGTGATCATCGGGTGGA
GCATCTTCTATTTCTTCAAGTCCTTCCAGTACCCGCTGCCCTGGAGTGAATGTCCTGTCGTCAGGAATGG
GAGCGTGGCAGTGGTGGAGGCAGAGTGTGAAAAGAGCTCAGCCACTACCTACTTCTGGTACCGAGAGGCC
TTGGACATCTCTGACTCCATCTCGGAGAGTGGGGGCCTCAACTGGAAGATGACCCTGTGCCTCCTCGTGG
CCTGGAGCATCGTGGGGATGGCTGTCGTTAAGGGCATCCAGTCCTCGGGGAAGGTGATGTATTTCAGCTC
CCTCTTCCCCTACGTGGTGCTGGCCTGCTTCCTGGTCCGGGGGCTGTTGCTGCGAGGGGCAGTTGATGGC
ATCCTACACATGTTCACTCCCAAGCTGGACAAGATGCTGGACCCCCAGGTGTGGCGGGAGGCAGCTACCC
AGGTCTTCTTTGCCTTGGGCCTGGGCTTTGGTGGTGTCATTGCCTTCTCCAGCTACAATAAGCAGGACAA
CAACTGCCACTTCGATGCCGCCCTGGTGTCCTTCATCAACTTCTTCACGTCAGTGTTGGCCACCCTCGTG
GTGTTTGCTGTGCTGGGCTTCAAGGCCAACATCATGAATGAGAAGTGTGTGGTCGAGAATGCTGAGAAAA
TCCTAGGGTACCTTAACACCAACGTCCTGAGCCGGGACCTCATCCCACCCCACGTCAACTTCTCCCACCT
GACCACAAAGGACTACATGGAGATGTACAATGTCATCATGACCGTGAAGGAGGACCAGTTCTCAGCCCTG
GGCCTTGACCCCTGCCTTCTGGAGGACGAGCTGGACAAGTCCGTGCAGGGCACAGGCCTGGCCTTCATCG
CCTTCACTGAGGCCATGACGCACTTCCCCGCCTCCCCGTTCTGGTCCGTCATGTTCTTCTTGATGCTTAT
CAACCTGGGCCTGGGCAGCATGATCGGGACCATGGCAGGCATCACCACGCCCATCATCGACACCTTCAAG
GTGCCCAAGGAGATGTTCACAGTGGGCTGCTGTGTCTTTGCATTCCTCGTGGGGCTGTTGTTCGTCCAGC
GCTCCGGAAACTACTTTGTCACCATGTTCGATGACTACTCGGCCACCCTGCCACTCACTCTCATCGTCAT
CCTTGAGAACATCGCTGTGGCCTGGATTTATGGAACCAAGAAGTTCATGCAGGAGCTGACGGAGATGCTG
GGCTTCCGCCCCTACCGCTTCTATTTCTACATGTGGAAGTTCGTGTCTCCACTATGCATGGCTGTGCTCA
CCACAGCCAGCATCATCCAGCTGGGGGTCACGCCCCCGGGCTACAGCGCCTGGATCAAGGAGGAGGCTGC
CGAGCGCTACCTGTATTTCCCCAACTGGGCCATGGCACTCCTGATCACCCTCATCGTCGTGGCGACGCTG
CCCATCCCTGTGGTGTTCGTCCTGCGGCACTTCCACCTGCTCTCTGATGGCTCCAACACCCTCTCCGTGT
CCTACAAGAAGGGCCGCATGATGAAGGACATCTCCAACCTGGAGGAGAACGATGAGACCCGCTTCATCCT
CAGCAAGGTGCCCAGTGAGGCACCTTCCCCCATGCCCACTCACCGTTCCTATCTGGGGCCCGGCAGCACA
TCACCCCTGGAGACCAGCGGTAACCCCAATGGACGCTATGGGAGCGGCTACCTGCTGGCCAGCACCCCTG
AGTCGGAGCTGTGA

Translation (727 aa):
MPKNSKVTQREHSSEHVTESVADLLALEEPVDYKQSVLNVAGEAGGKQKAVEEELDAEDRPAWNSKLQYI
LAQIGFSVGLGNIWRFPYLCQKNGGGAYLVPYLVLLIIIGIPLFFLELAVGQRIRRGSIGVWHYICPRLG
GIGFSSCIVCLFVGLYYNVIIGWSIFYFFKSFQYPLPWSECPVVRNGSVAVVEAECEKSSATTYFWYREA
LDISDSISESGGLNWKMTLCLLVAWSIVGMAVVKGIQSSGKVMYFSSLFPYVVLACFLVRGLLLRGAVDG
ILHMFTPKLDKMLDPQVWREAATQVFFALGLGFGGVIAFSSYNKQDNNCHFDAALVSFINFFTSVLATLV
VFAVLGFKANIMNEKCVVENAEKILGYLNTNVLSRDLIPPHVNFSHLTTKDYMEMYNVIMTVKEDQFSAL
GLDPCLLEDELDKSVQGTGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLGSMIGTMAGITTPIIDTFK
VPKEMFTVGCCVFAFLVGLLFVQRSGNYFVTMFDDYSATLPLTLIVILENIAVAWIYGTKKFMQELTEML
GFRPYRFYFYMWKFVSPLCMAVLTTASIIQLGVTPPGYSAWIKEEAAERYLYFPNWAMALLITLIVVATL
PIPVVFVLRHFHLLSDGSNTLSVSYKKGRMMKDISNLEENDETRFILSKVPSEAPSPMPTHRSYLGPGST
SPLETSGNPNGRYGSGYLLASTPESEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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