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Report for CCDS93123.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93123.1 Public Homo sapiens 22 CCDC188 24 110 108 CCDS HistoryNCBI Gene:388849Re-query CCDS DB by CCDS ID:93123.1See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 93123.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000439765.4 ENSP00000409542.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000439765.4Link to Ensembl Protein Viewer:ENSP00000409542.2Re-query CCDS DB by Nucleotide ID:ENST00000439765Re-query CCDS DB by Protein ID:ENSP00000409542
Original member Current member NCBI NM_001365892.2 NP_001352821.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001365892.2Link to Protein Sequence:NP_001352821.1Re-query CCDS DB by Nucleotide ID:NM_001365892Re-query CCDS DB by Protein ID:NP_001352821Link to BLAST:NP_001352821.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001352821.1 402 H7C350 402 100% 0 0

Chromosomal Locations for CCDS 93123.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 20148614 20148800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20148875 20148924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20149187 20149244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20149412 20149476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20149581 20149640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20149724 20149780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20149955 20150059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20150143 20150250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20150468 20150986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1209 nt):
ATGGAGGGGCTGAAAACCCTGGGCCCCTGCGGCCACCCCCACCCCCAGTGTCCCCCAACCCCAGCCTCCA
GCAGCCATGGAGGAGGCCTGGACCAGCCCTGCCAGGGATTTGTAGGGTGGCCCTGCCTGGGCCCCATCTC
CTCTGCTCACTCAGTGCAGTCCCAGAGACCTTTCCCAGTCCCAGGGGCAGGGGGCAGTGGGCCCACAGTG
GAGGGCGAGGCTCCCGGGCTCTTTCTGTCCAGCCAGGAGCAGAGAGCGAGAGACACTGAGGGGCCGAGAC
AAGGAGACCTGGAGGCAGGGCTTGGGTGGGGCTGGCCCCTGCACCCAGGGTCGAACCAGGGGGCTCCCAG
GCAGGGGGGATCCATTGGCTCAGGGACCAGACCCTGCCCATGCCCACCCCTGTCACGGGAGGGAGGGGCC
CTGGCCTCGCCCAGGGTAGCCCTGTCCCAGCTTCAGTGCGGGCTGCTGGGCTCTGCAGAACAGTCCTTCC
TGCAGCTGGAGCAGGAGAACCACAGCCTGAAAAGGCAGAATCAGGAACTTCGGGAGCAGCTGGGGGCCCT
CCTGGGGCCGGGGCAGCAGTTCCTGCCCCTGTGTCCCGAACACTCAAGCTGCACTGCTCTGGCCTGGCCC
CCCGACCCGGCTGGCACGCAGCCCTTGGGGAACAGGGCACCTCTGCAGCTGCTGCGGCGGGAGCTGTGCC
AGGGGCAAGAGGCTTTCGTGCAACAGTCCCAGAACGAGCTGCAGCAGATCCGCCTGTGCTTTGAGAGGAA
GAAGATGGTCATCACAGAGGTGTGGGACAACGTGGCTGAGATGCACATGGCCCTGAACAACCAGGCCACC
GGGCTCCTGAACCTCAAGAAGGACATCCGGGGCGTGCTGGACCAGATGGAGGACATCCAGCTGGAGATTC
TCAGGGAGCGGGCCCAGTGCCGCACTCGAGCCAGGAAGGAGAAGCAGATGGCAAGCATGTCGAAAGGGAG
GCCAAAGCTGGGAAGCTCCAAGGGCCTGGCAGGCCAGCTCTGGCTGCTGACCCTGAGGCTGCTGCTGGGC
GCCCTGCTGGTCTGGACCGCTGCCTACGTGTACGTGGTGAACCCCACACCTTTCGAGGGGCTGGTGCCAC
CCCTGCTGAGCCGTGCCACCGTCTGGAAGCTCCGGGCCCTGCTGGACCCCTTCCTGCGCCTCAAAGTGGA
CGGCTTCCTGCCCTTCTAG

Translation (402 aa):
MEGLKTLGPCGHPHPQCPPTPASSSHGGGLDQPCQGFVGWPCLGPISSAHSVQSQRPFPVPGAGGSGPTV
EGEAPGLFLSSQEQRARDTEGPRQGDLEAGLGWGWPLHPGSNQGAPRQGGSIGSGTRPCPCPPLSREGGA
LASPRVALSQLQCGLLGSAEQSFLQLEQENHSLKRQNQELREQLGALLGPGQQFLPLCPEHSSCTALAWP
PDPAGTQPLGNRAPLQLLRRELCQGQEAFVQQSQNELQQIRLCFERKKMVITEVWDNVAEMHMALNNQAT
GLLNLKKDIRGVLDQMEDIQLEILRERAQCRTRARKEKQMASMSKGRPKLGSSKGLAGQLWLLTLRLLLG
ALLVWTAAYVYVVNPTPFEGLVPPLLSRATVWKLRALLDPFLRLKVDGFLPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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