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Report for CCDS35212.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
35212.2 |
Public |
Homo sapiens |
X |
MAP3K15 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:389840](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:35212.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome X in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 35212.1 |
This gene lacks full-length transcript support, and therefore this CCDS representation has an inferred exon combination based on partial transcript and RNA-seq alignments. |
Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 35212.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000338883.9 |
ENSP00000345629.4 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000338883.9](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000345629.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000338883](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000345629](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001001671.4 |
NP_001001671.3 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001001671.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001001671.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001001671](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001001671](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001001671.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001001671.3 |
1313 |
Q6ZN16-1 |
1313 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 35212.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3942 nt): ATGGAGAGCGGCGGTGGGAATGCTCCGGCCGGGGCCCTCGGGGCGGCGAGCGAGTCCCCTCAGTGCCCGC CGCCGCCGGGGGTGGAGGGCGCGGCCGGGCCGGCGGAGCCCGACGGGGCGGCGGAGGGCGCGGCAGGCGG CAGCGGCGAGGGCGAGAGTGGGGGCGGGCCGCGGCGGGCTCTGCGGGCAGTATACGTGCGCAGTGAGAGC TCCCAGGGCGGCGCGGCCGGCGGCCCGGAGGCTGGGGCGCGGCAGTGCCTGCTGCGGGCCTGCGAGGCCG AGGGCGCTCACCTCACCTCCGTGCCCTTCGGGGAGCTGGACTTCGGGGAGACGGCCGTGCTCGACGCCTT CTACGACGCAGATGTTGCTGTGGTAGACATGAGCGATGTCTCCAGACAGCCTTCCCTCTTCTACCATCTT GGAGTCCGAGAAAGCTTTGACATGGCCAATAATGTGATCTTGTACCATGACACCGATGCCGACACTGCTC TCTCTTTGAAGGACATGGTAACTCAAAAAAACACAGCATCCAGTGGAAATTATTATTTCATCCCATACAT CGTGACACCGTGCGCTGATTATTTTTGCTGCGAGAGTGATGCCCAGAGACGAGCCTCCGAGTACATGCAG CCCAACTGGGACAACATCCTGGGCCCGCTGTGCATGCCTTTGGTGGACAGGTTCATTAGCCTCCTTAAGG ACATCCACGTGACCTCATGTGTTTATTACAAAGAAACCTTGTTAAATGACATCCGGAAAGCCAGAGAGAA ATACCAAGGTGAGGAACTGGCGAAGGAGCTAGCTCGGATCAAGCTCCGCATGGATAATACTGAGGTTCTG ACCTCAGACATCATCATTAACTTACTCCTGTCCTACCGTGATATCCAGGACTATGATGCGATGGTGAAGC TGGTGGAAACACTGGAGATGCTGCCTACGTGTGATTTGGCCGATCAGCATAACATTAAATTCCACTATGC GTTTGCACTGAATAGGAGAAACAGCACAGGTGACCGTGAGAAGGCTCTGCAGATCATGCTCCAGGTTCTG CAGAGCTGTGATCACCCGGGCCCCGACATGTTCTGCCTGTGTGGGAGGATCTACAAGGACATCTTCTTGG ATTCAGACTGCAAAGATGACACCAGCCGCGACAGCGCCATTGAGTGGTATCGCAAAGGGTTTGAACTCCA GTCATCCCTCTATTCGGGAATTAATCTTGCAGTTTTGCTGATTGTTGCTGGACAACAATTTGAAACTTCC TTGGAACTAAGGAAAATAGGTGTCCGGCTGAACAGTTTGTTGGGAAGAAAAGGGAGCTTGGAGAAAATGA ACAATTACTGGGATGTGGGTCAGTTCTTCAGCGTCAGCATGCTGGCCCATGATGTCGGGAAAGCCGTCCA GGCAGCAGAGAGGTTGTTCAAACTGAAACCTCCAGTCTGGTACCTGCGATCATTAGTTCAGAACTTGTTA CTAATTCGGCGCTTCAAGAAAACCATTATTGAACACTCGCCCAGGCAAGAGCGGCTGAACTTCTGGTTAG ATATAATTTTTGAGGCAACAAATGAAGTCACTAATGGACTCAGATTTCCAGTTCTGGTCATAGAGCCAAC CAAAGTGTACCAGCCTTCTTATGTTTCCATAAACAATGAAGCCGAGGAGAGAACAGTTTCTTTATGGCAT GTCTCACCCACAGAAATGAAACAGATGCACGAATGGAATTTTACAGCCTCTTCCATAAAGGGAATAAGCC TATCAAAGTTTGATGAAAGGTGTTGTTTTCTTTATGTCCATGATAATTCTGATGACTTTCAAATCTACTT TTCCACCGAAGAGCAGTGCAGTAGATTTTTCTCTTTGGTCAAAGAGATGATAACCAATACAGCAGGCAGT ACGGTGGAGCTGGAGGGAGAGACCGATGGAGACACCTTGGAGTATGAGTATGACCATGATGCAAATGGTG AGAGAGTTGTCTTGGGGAAAGGCACGTATGGGATTGTGTATGCTGGCCGAGATCTGAGCAATCAAGTGCG AATAGCCATCAAAGAAATCCCGGAGAGAGATAGCAGGTATTCTCAGCCTCTGCACGAGGAGATAGCCCTG CACAAGTACCTTAAGCACCGCAATATCGTTCAGTACCTGGGCTCTGTTTCAGAGAACGGCTACATTAAGA TATTTATGGAGCAGGTGCCTGGAGGAAGCCTTTCTGCTCTTCTGCGATCCAAATGGGGGCCGATGAAGGA ACCGACAATCAAGTTTTACACCAAACAGATCCTGGAGGGCCTTAAGTATCTTCATGAAAACCAGATCGTG CACAGAGACATAAAGGGCGATAATGTTCTGGTGAACACCTACAGCGGAGTGGTGAAAATCTCCGATTTTG GAACCTCGAAACGTCTTGCGGGTGTGAACCCCTGCACAGAGACTTTTACTGGCACCCTGCAGTACATGGC ACCTGAGATAATTGACCAAGGGCCTCGCGGATATGGTGCCCCAGCCGATATCTGGTCCCTGGGCTGCACC ATCATTGAGATGGCCACCAGCAAGCCTCCGTTCCATGAGCTTGGTGAGCCGCAGGCAGCCATGTTCAAAG TGGGCATGTTTAAGATCCACCCTGAGATTCCAGAAGCCCTTTCAGCTGAAGCCCGAGCCTTCATTTTATC CTGTTTCGAGCCTGACCCCCACAAACGTGCCACCACTGCTGAGCTACTGAGAGAGGGTTTCTTAAGGCAG GTGAACAAGGGCAAGAAGAACCGAATTGCCTTCAAGCCCTCAGAAGGTCCCCGCGGTGTCGTCCTGGCCC TGCCCACACAGGGAGAGCCCATGGCCACCAGCAGCAGCGAGCACGGCTCTGTCTCCCCAGACTCCGACGC CCAGCCTGACGCACTCTTTGAGAGGACCCGGGCGCCCAGGCACCACCTTGGCCACCTCCTCAGTGTTCCA GACGAGAGCTCAGCCTTGGAAGACCGGGGCTTGGCCTCGTCCCCGGAGGACAGGGACCAGGGCCTCTTCC TGCTACGCAAGGACAGTGAGCGCCGTGCCATCCTGTACAAAATCCTCTGGGAGGAGCAGAACCAGGTGGC TTCCAACCTGCAGGAGTGTGTGGCCCAGAGTTCCGAAGAGTTGCATCTCTCAGTTGGACACATCAAGCAA ATCATTGGGATCCTGAGGGACTTCATCCGCTCCCCAGAGCACCGGGTGATGGCGACCACAATATCAAAGC TCAAGGTGGACCTGGACTTTGACAGCTCGTCCATCAGTCAGATTCACCTGGTGCTGTTCGGATTTCAGGA TGCCGTAAATAAAATTTTGAGGAACCACTTAATTAGGCCCCACTGGATGTTCGCGATGGACAACATCATC CGCCGAGCGGTGCAGGCCGCGGTCACCATTCTCATCCCAGAGCTCCGAGCCCACTTTGAGCCTACCTGTG AGACTGAAGGGGTAGATAAGGACATGGATGAAGCGGAAGAGGGCTATCCCCCAGCCACCGGACCTGGCCA GGAGGCCCAGCCCCACCAGCAGCACCTGAGCCTCCAGCTGGGTGAGCTCAGACAGGAGACCAACAGACTT TTGGAACACCTAGTTGAAAAAGAGAGAGAGTACCAGAATCTTCTGCGGCAAACTCTAGAACAGAAAACTC AAGAATTGTATCACCTTCAGTTAAAATTAAAATCGAATTGTATTACAGAGAACCCAGCAGGCCCCTACGG GCAGAGAACAGATAAAGAGCTTATAGACTGGTTGCGGCTGCAAGGAGCTGATGCAAAGACAATTGAAAAG ATTGTTGAAGAGGGTTATACACTTTCGGATATTCTTAATGAGATCACTAAGGAAGATCTAAGATACCTTC GACTACGGGGTGGTCTCCTCTGCAGACTCTGGAGTGCGGTCTCCCAGTACAGAAGGGCTCAGGAGGCCTC AGAAACCAAAGACAAGGCTTGA
Translation (1313 aa): MESGGGNAPAGALGAASESPQCPPPPGVEGAAGPAEPDGAAEGAAGGSGEGESGGGPRRALRAVYVRSES SQGGAAGGPEAGARQCLLRACEAEGAHLTSVPFGELDFGETAVLDAFYDADVAVVDMSDVSRQPSLFYHL GVRESFDMANNVILYHDTDADTALSLKDMVTQKNTASSGNYYFIPYIVTPCADYFCCESDAQRRASEYMQ PNWDNILGPLCMPLVDRFISLLKDIHVTSCVYYKETLLNDIRKAREKYQGEELAKELARIKLRMDNTEVL TSDIIINLLLSYRDIQDYDAMVKLVETLEMLPTCDLADQHNIKFHYAFALNRRNSTGDREKALQIMLQVL QSCDHPGPDMFCLCGRIYKDIFLDSDCKDDTSRDSAIEWYRKGFELQSSLYSGINLAVLLIVAGQQFETS LELRKIGVRLNSLLGRKGSLEKMNNYWDVGQFFSVSMLAHDVGKAVQAAERLFKLKPPVWYLRSLVQNLL LIRRFKKTIIEHSPRQERLNFWLDIIFEATNEVTNGLRFPVLVIEPTKVYQPSYVSINNEAEERTVSLWH VSPTEMKQMHEWNFTASSIKGISLSKFDERCCFLYVHDNSDDFQIYFSTEEQCSRFFSLVKEMITNTAGS TVELEGETDGDTLEYEYDHDANGERVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIAL HKYLKHRNIVQYLGSVSENGYIKIFMEQVPGGSLSALLRSKWGPMKEPTIKFYTKQILEGLKYLHENQIV HRDIKGDNVLVNTYSGVVKISDFGTSKRLAGVNPCTETFTGTLQYMAPEIIDQGPRGYGAPADIWSLGCT IIEMATSKPPFHELGEPQAAMFKVGMFKIHPEIPEALSAEARAFILSCFEPDPHKRATTAELLREGFLRQ VNKGKKNRIAFKPSEGPRGVVLALPTQGEPMATSSSEHGSVSPDSDAQPDALFERTRAPRHHLGHLLSVP DESSALEDRGLASSPEDRDQGLFLLRKDSERRAILYKILWEEQNQVASNLQECVAQSSEELHLSVGHIKQ IIGILRDFIRSPEHRVMATTISKLKVDLDFDSSSISQIHLVLFGFQDAVNKILRNHLIRPHWMFAMDNII RRAVQAAVTILIPELRAHFEPTCETEGVDKDMDEAEEGYPPATGPGQEAQPHQQHLSLQLGELRQETNRL LEHLVEKEREYQNLLRQTLEQKTQELYHLQLKLKSNCITENPAGPYGQRTDKELIDWLRLQGADAKTIEK IVEEGYTLSDILNEITKEDLRYLRLRGGLLCRLWSAVSQYRRAQEASETKDKA
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