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Report for CCDS11382.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11382.1 Public Homo sapiens 17 KRT39 24 110 108 CCDS HistoryNCBI Gene:390792Re-query CCDS DB by CCDS ID:11382.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11382.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355612.7 ENSP00000347823.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355612.7Link to Ensembl Protein Viewer:ENSP00000347823.2Re-query CCDS DB by Nucleotide ID:ENST00000355612Re-query CCDS DB by Protein ID:ENSP00000347823
Original member Current member NCBI NM_213656.4 NP_998821.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_213656.4Link to Protein Sequence:NP_998821.3Re-query CCDS DB by Nucleotide ID:NM_213656Re-query CCDS DB by Protein ID:NP_998821Link to BLAST:NP_998821.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_998821.3 491 Q6A163 491 100% 0 0

Chromosomal Locations for CCDS 11382.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 40958601 40958859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40960281 40960501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40962162 40962287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40962402 40962563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40963627 40963783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40964446 40964528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40966389 40966856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1476 nt):
ATGGACACCAAGGGCTGTACAACAACCAATTCTCCTTCAACCCCATGTCAAAACTGCTCTAGGATTACAA
ATGTTAGTACCATCTCTTCTAACAACGGCTGCCATCCTGGTGGCCTTACAGTCAACAACTGTCAACCAGC
TGGCCACGTTCTCAGAATTCCCTGGGACCAGGGCTGCCAACCCACTCCTCGCTTTTGTCGCAAGCCCATC
TACCTAATGAACAACTTCAATGCCCGTTTTTCTCTGGATGACTGCAGCTGGTATGGTGAAGGCATCAACA
GTAATGAGAAGGAGACCATGCAAATCTTGAACGAGCGCCTTGCTAACTACCTGCAAAAGGTGCGAATGCT
AGAACGAGAGAATGCTGAACTGGAATCTAAAATCCAGGAAGAAAGTAACAAAGAGCTCCCTGTTCTATGT
CCTGATTACCTGTCTTACTACACTACCATTGAGGAGCTCCAGCAGAAGATCTTGTGTACCAAGGCCGAGA
ATTCCAGACTGGTCTCGCAAATTGACAACACCAAACTGACTGCAGATGACTTGAGAGCCAAATACGAAGC
TGAGGTGTCTCTACGCCAGCTGGTAGAGTCAGATGCCAATGGCCTCAAGCAGATCCTGAATGTGCTGACC
CTGGGCAAGGCCGACCTAGAGGCACAAGTCCAGTCTCTGAAAGAGGAGCTCCTTTGCCTCAAGAACAACC
ACAAAGAGGAAATCAATTCTTTACAGTGTCAGCTTGGGGAGAGACTTGACATTGAAGTGACTGCTGCCCC
TTCTGCTGACCTAAACCAGGTTCTACAAGAAATGAGATGTCAATATGAGCCCATCATGGAGACAAACCGC
AAAGATGTGGAACAGTGGTTCAACACGCAGATAGAGGAGCTGAATCAACAAGTGGTGACCAGCTCTCAAC
AGCAGCAATGCTGCCAAAAGGAGATCATAGAACTGAGACGCAGTGTGAACACTCTGGAGGTTGAACTGCA
GGCCCAGCATCGAATGAGAGATTCCCAAGAGTGCATCCTAACGGAGACAGAGGCTCGCTACACGGCCTTG
CTGACCCAGATCCAGAGTCTGATTGATAACCTGGAAGCTCAGCTGGCAGAGATCCGGTGTGCCCTGGAAA
GACAGAACCAAGAATACGAGATCCTGCTGGACGTCAAGTCCCGGCTGGAATGTGAGATTACCACATACCG
CAGCCTTCTGGAGAGCTCGGATGGCAAGCGTCCCTGTTACCCACGTGCCACCAAATGTGAGCCTTCCCCT
TGGACATCTTGTAAGTCCGGAGCCATAGAAAGCACGGCCCCAGCTTGCACATCCTCATCCCCCTGCAGCT
TAAAGGAGCACTGCAGTGCCTGCGGACCCCTGTCCCGGATACTGGTTAAAATTTGCACCATCACCAAGGA
GATTAAGGATGGGAAGGTCATTTCTTCTTACGAGCATGTGCAGCCTTGTTTCATCATCAGACCTGCCAAA
GTCTAA

Translation (491 aa):
MDTKGCTTTNSPSTPCQNCSRITNVSTISSNNGCHPGGLTVNNCQPAGHVLRIPWDQGCQPTPRFCRKPI
YLMNNFNARFSLDDCSWYGEGINSNEKETMQILNERLANYLQKVRMLERENAELESKIQEESNKELPVLC
PDYLSYYTTIEELQQKILCTKAENSRLVSQIDNTKLTADDLRAKYEAEVSLRQLVESDANGLKQILNVLT
LGKADLEAQVQSLKEELLCLKNNHKEEINSLQCQLGERLDIEVTAAPSADLNQVLQEMRCQYEPIMETNR
KDVEQWFNTQIEELNQQVVTSSQQQQCCQKEIIELRRSVNTLEVELQAQHRMRDSQECILTETEARYTAL
LTQIQSLIDNLEAQLAEIRCALERQNQEYEILLDVKSRLECEITTYRSLLESSDGKRPCYPRATKCEPSP
WTSCKSGAIESTAPACTSSSPCSLKEHCSACGPLSRILVKICTITKEIKDGKVISSYEHVQPCFIIRPAK
V


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 Genome Browser Links:   Ensembl Genome Browser
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