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Report for CCDS10854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10854.1 Public Homo sapiens 16 LCAT 24 110 108 CCDS HistoryNCBI Gene:3931Re-query CCDS DB by CCDS ID:10854.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10854.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264005.10 ENSP00000264005.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264005.10Link to Ensembl Protein Viewer:ENSP00000264005.5Re-query CCDS DB by Nucleotide ID:ENST00000264005Re-query CCDS DB by Protein ID:ENSP00000264005
Original member Current member NCBI NM_000229.2 NP_000220.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000229.2Link to Protein Sequence:NP_000220.1Re-query CCDS DB by Nucleotide ID:NM_000229Re-query CCDS DB by Protein ID:NP_000220Link to BLAST:NP_000220.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000220.1 440 P04180 440 100% 0 0

Chromosomal Locations for CCDS 10854.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 67939904 67940478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67942363 67942587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67942671 67942766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67942861 67942976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67943056 67943212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67943948 67944101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1323 nt):
ATGGGGCCGCCCGGCTCCCCATGGCAGTGGGTGACGCTGCTGCTGGGGCTGCTGCTCCCTCCTGCCGCCC
CCTTCTGGCTCCTCAATGTGCTCTTCCCCCCGCACACCACGCCCAAGGCTGAGCTCAGTAACCACACACG
GCCCGTCATCCTCGTGCCCGGCTGCCTGGGGAATCAGCTAGAAGCCAAGCTGGACAAACCAGATGTGGTG
AACTGGATGTGCTACCGCAAGACAGAGGACTTCTTCACCATCTGGCTGGATCTCAACATGTTCCTACCCC
TTGGGGTAGACTGCTGGATCGATAACACCAGGGTTGTCTACAACCGGAGCTCTGGGCTCGTGTCCAACGC
CCCTGGTGTCCAGATCCGCGTCCCTGGCTTTGGCAAGACCTACTCTGTGGAGTACCTGGACAGCAGCAAG
CTGGCAGGGTACCTGCACACACTGGTGCAGAACCTGGTCAACAATGGCTACGTGCGGGACGAGACTGTGC
GCGCCGCCCCCTATGACTGGCGGCTGGAGCCCGGCCAGCAGGAGGAGTACTACCGCAAGCTCGCAGGGCT
GGTGGAGGAGATGCACGCTGCCTATGGGAAGCCTGTCTTCCTCATTGGCCACAGCCTCGGCTGTCTACAC
TTGCTCTATTTCCTGCTGCGCCAGCCCCAGGCCTGGAAGGACCGCTTTATTGATGGCTTCATCTCTCTTG
GGGCTCCCTGGGGTGGCTCCATCAAGCCCATGCTGGTCTTGGCCTCAGGTGACAACCAGGGCATCCCCAT
CATGTCCAGCATCAAGCTGAAAGAGGAGCAGCGCATAACCACCACCTCCCCCTGGATGTTTCCCTCTCGC
ATGGCGTGGCCTGAGGACCACGTGTTCATTTCCACACCCAGCTTCAACTACACAGGCCGTGACTTCCAAC
GCTTCTTTGCAGACCTGCACTTTGAGGAAGGCTGGTACATGTGGCTGCAGTCACGTGACCTCCTGGCAGG
ACTCCCAGCACCTGGTGTGGAAGTATACTGTCTTTACGGCGTGGGCCTGCCCACGCCCCGCACCTACATC
TACGACCACGGCTTCCCCTACACGGACCCTGTGGGTGTGCTCTATGAGGATGGTGATGACACGGTGGCGA
CCCGCAGCACCGAGCTCTGTGGCCTGTGGCAGGGCCGCCAGCCACAGCCTGTGCACCTGCTGCCCCTGCA
CGGGATACAGCATCTCAACATGGTCTTCAGCAACCTGACCCTGGAGCACATCAATGCCATCCTGCTGGGT
GCCTACCGCCAGGGTCCCCCTGCATCCCCGACTGCCAGCCCAGAGCCCCCGCCTCCTGAATAA

Translation (440 aa):
MGPPGSPWQWVTLLLGLLLPPAAPFWLLNVLFPPHTTPKAELSNHTRPVILVPGCLGNQLEAKLDKPDVV
NWMCYRKTEDFFTIWLDLNMFLPLGVDCWIDNTRVVYNRSSGLVSNAPGVQIRVPGFGKTYSVEYLDSSK
LAGYLHTLVQNLVNNGYVRDETVRAAPYDWRLEPGQQEEYYRKLAGLVEEMHAAYGKPVFLIGHSLGCLH
LLYFLLRQPQAWKDRFIDGFISLGAPWGGSIKPMLVLASGDNQGIPIMSSIKLKEEQRITTTSPWMFPSR
MAWPEDHVFISTPSFNYTGRDFQRFFADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPTPRTYI
YDHGFPYTDPVGVLYEDGDDTVATRSTELCGLWQGRQPQPVHLLPLHGIQHLNMVFSNLTLEHINAILLG
AYRQGPPASPTASPEPPPPE


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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