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Report for CCDS58159.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58159.1 Public Homo sapiens 11 XRRA1 24 110 108 CCDS HistoryNCBI Gene:143570Re-query CCDS DB by CCDS ID:58159.1Re-query CCDS DB by GeneID:143570See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58159.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321448.12 ENSP00000319303.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000321448.12Link to Ensembl Protein Viewer:ENSP00000319303.8Re-query CCDS DB by Nucleotide ID:ENST00000321448Re-query CCDS DB by Protein ID:ENSP00000319303
Original member Current member NCBI NM_001270381.3 NP_001257310.1 Accepted alive Link to Nucleotide Sequence:NM_001270381.3Link to Protein Sequence:NP_001257310.1Re-query CCDS DB by Nucleotide ID:NM_001270381Re-query CCDS DB by Protein ID:NP_001257310Link to BLAST:NP_001257310.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257310.1 517 Q6P2D8-5 517 100% 0 0

Chromosomal Locations for CCDS 58159.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 74843200 74843453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74843854 74843959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74844168 74844283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74845073 74845271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74848115 74848462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74851088 74851203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74851989 74852082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74862981 74863021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74906239 74906456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74907145 74907206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGCTGGATGACAACAGACTCTCCAACCCCAGTTGCTTTGCCAGCCTGGCTGGGCTCAGGAGACTGAAGA
AGTTAAGCTTGGATGAAAACAGGATTATCAGGATCCCATACCTACAGCAAGTTCAGCTCTATGACGAGTC
AGTAGACTGGAATGGAGGCAGGGGAAGTCCCCATAAAGAGCCCCAATTCATGCTGCAGTCCAAGCCAAGG
ATGCTTGAGGACTCAGATGAGCAACTGGATTATACTGTACTGCCCATGAAAAAGGATGTTGACCGGACAG
AGGTTGTGTTTTCATCTTACCCTGGATTTTCAACCTCAGAGATCGCAAAAGAGGATGCTGTCCTACCAGT
AGCTCTCTTCCCATCTCTCTGCGAGTTCGTCTTTCATAACAACCCTCTGGTGGCCCATACACGAGGGGTC
CCTCCACTGCTGAAGAGCTTCCTCCAGGAGCGACTGGGAATCCACTTAATTCGAAGGAAGATAGTAAAGC
CTAAGCATCATGTTTTGATGTCTCGGAAGGAATCATGGAAGGTGAAAAGCGAAATCCCAAAGGTGCCGAA
GCAGCCTCTGGTGCTCCATCACCCGCGCATGACGACAACCAAGTCTCCCTCAAAGGATATGCTAGAGCCA
GAGGCAGAGCTGGCTGAAGATCTGCCCACTACCAAAAGCACTTCTGTGGAGTCAGAGATGCCCACTGAGA
ACCTGGAAGGCCATTCCCCGTCTTGCCGGACCTTCGTGCCACTGCCTCCCATCTGCTCCAACTCCACTGT
GCATAGTGAAGAGACCCTGTCCCACCTGAGTGACACAACTGTCCGCCTCAGCCCAGAGCGCCCATCAGAT
GAGGACTCCAAGAGCACAGAGTCCATCTTCCTGACCCAGGTGAGTGAACTGCCTTCCTCCGTCATCCATA
AGGATGATTTAGAGTTAAAGGAGAAAGACCAAAAGAAACCACCAACGGCACCCAGAGAGGTGAAAGGGAC
TCGGAGGAAACTCCCAACTGCCTTCCTTCCCAGCAAGTACCACGGCTATGAAGAACTGCTGACAGCCAAG
CCTGATCCAGCCTTCATTGAGCCAAAGGGAATCCAGAAGAATGCACAAGCCCTGCAACAAATGCTGAAGC
ACCCACTCCTGTGCCACTCCTCCAAGCCCAAGCTGGACACTCTTCAGAAACCCTATGTTCACAAAGAGAA
ACGGGCCCAGAGAATCCCGATTCCACCCCCAAAGAAGACTAGAGCCCAACTTCTGGATGACATCTTCATT
CGCTTGCGGGATCCCCGGAACATTACAGAGGCTCCACTAGGTGCTGTCCTGCACCAGTGGACAGAACGGC
GGCTGGTGAACCACAAGCAGTACCTGGAGGCCAAGAGGCTGTTGAAGGAGTTCCAGGCACGTTACCGGCA
GCTGGTGAGTGGCTCTCTGCGCACAGTGTTCGGGACTACCCCGCTCCCCATGGCCTGCCCAGCGCTGAGT
GAGAGCCAGCCCAAGTTCGGCCACTTCCTCGAGTTCATGGATGAGTTCTGCCAGGAGCCCACAGCCAGTG
ACTCACAAGGCTAG

Translation (517 aa):
MLDDNRLSNPSCFASLAGLRRLKKLSLDENRIIRIPYLQQVQLYDESVDWNGGRGSPHKEPQFMLQSKPR
MLEDSDEQLDYTVLPMKKDVDRTEVVFSSYPGFSTSEIAKEDAVLPVALFPSLCEFVFHNNPLVAHTRGV
PPLLKSFLQERLGIHLIRRKIVKPKHHVLMSRKESWKVKSEIPKVPKQPLVLHHPRMTTTKSPSKDMLEP
EAELAEDLPTTKSTSVESEMPTENLEGHSPSCRTFVPLPPICSNSTVHSEETLSHLSDTTVRLSPERPSD
EDSKSTESIFLTQVSELPSSVIHKDDLELKEKDQKKPPTAPREVKGTRRKLPTAFLPSKYHGYEELLTAK
PDPAFIEPKGIQKNAQALQQMLKHPLLCHSSKPKLDTLQKPYVHKEKRAQRIPIPPPKKTRAQLLDDIFI
RLRDPRNITEAPLGAVLHQWTERRLVNHKQYLEAKRLLKEFQARYRQLVSGSLRTVFGTTPLPMACPALS
ESQPKFGHFLEFMDEFCQEPTASDSQG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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