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Report for CCDS8414.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8414.1 Public Homo sapiens 11 HINFP 24 110 108 CCDS HistoryNCBI Gene:25988Re-query CCDS DB by CCDS ID:8414.1Re-query CCDS DB by GeneID:25988See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8414.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000350777.7 ENSP00000318085.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000350777.7Link to Ensembl Protein Viewer:ENSP00000318085.3Re-query CCDS DB by Nucleotide ID:ENST00000350777Re-query CCDS DB by Protein ID:ENSP00000318085
Original member Current member NCBI NM_001351958.2 NP_001338887.1 Accepted alive Link to Nucleotide Sequence:NM_001351958.2Link to Protein Sequence:NP_001338887.1Re-query CCDS DB by Nucleotide ID:NM_001351958Re-query CCDS DB by Protein ID:NP_001338887Link to BLAST:NP_001338887.1
Original member Current member NCBI NM_001351959.2 NP_001338888.1 Accepted alive Link to Nucleotide Sequence:NM_001351959.2Link to Protein Sequence:NP_001338888.1Re-query CCDS DB by Nucleotide ID:NM_001351959Re-query CCDS DB by Protein ID:NP_001338888Link to BLAST:NP_001338888.1
Original member Current member NCBI NM_001351960.2 NP_001338889.1 Accepted alive Link to Nucleotide Sequence:NM_001351960.2Link to Protein Sequence:NP_001338889.1Re-query CCDS DB by Nucleotide ID:NM_001351960Re-query CCDS DB by Protein ID:NP_001338889Link to BLAST:NP_001338889.1
Original member Current member NCBI NM_015517.5 NP_056332.2 Accepted alive Link to Nucleotide Sequence:NM_015517.5Link to Protein Sequence:NP_056332.2Re-query CCDS DB by Nucleotide ID:NM_015517Re-query CCDS DB by Protein ID:NP_056332Link to BLAST:NP_056332.2
Original member Current member NCBI NM_198971.3 NP_945322.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198971.3Link to Protein Sequence:NP_945322.1Re-query CCDS DB by Nucleotide ID:NM_198971Re-query CCDS DB by Protein ID:NP_945322Link to BLAST:NP_945322.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001338887.1 517 Q9BQA5-1 517 100% 0 0
NP_001338888.1 517 Q9BQA5-1 517 100% 0 0
NP_001338889.1 517 Q9BQA5-1 517 100% 0 0
NP_056332.2 517 Q9BQA5-1 517 100% 0 0
NP_945322.1 517 Q9BQA5-1 517 100% 0 0

Chromosomal Locations for CCDS 8414.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 119126945 119127125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119130725 119130954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119131535 119131646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119131830 119131982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119132496 119132573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119132661 119132781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119132864 119133002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119133095 119133219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119134084 119134498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGCCGCCTCCTGGGAAAGTTCCCCGAAAGGAGAATCTGTGGCTACAGTGTGAGTGGGGGTCCTGCTCCT
TTGTGTGCTCAACCATGGAAAAGTTCTTTGAGCATGTCACTCAGCACCTGCAGCAGCACCTGCATGGCTC
TGGGGAGGAGGAGGAAGAGGAAGAGGAGGATGACCCACTTGAGGAAGAATTCTCCTGCTTGTGGCAGGAA
TGTGGCTTTTGTTCTCTGGACAGTTCTGCTGACCTCATCCGCCATGTCTACTTCCACTGCTACCACACCA
AGCTGAAACAGTGGGGGCTGCAGGCCTTGCAAAGCCAGGCTGACCTTGGCCCCTGCATCCTGGACTTCCA
GAGCCGGAACGTCATCCCTGATATCCCTGACCACTTCCTGTGTCTGTGGGAGCACTGTGAGAATTCCTTC
GACAATCCTGAGTGGTTTTATCGGCATGTGGAAGCACACAGTCTGTGCTGTGAATACGAAGCAGTCGGCA
AGGACAACCCGGTGGTGCTGTGTGGCTGGAAAGGCTGTACCTGCACCTTCAAGGACCGCAGTAAACTTCG
AGAGCACCTCCGCAGCCATACCCAGGAGAAAGTGGTAGCCTGCCCCACCTGTGGGGGCATGTTTGCCAAC
AATACCAAGTTCTTAGATCACATCCGTCGCCAGACCTCATTGGATCAGCAGCACTTCCAGTGTTCTCACT
GTTCCAAGAGATTTGCCACAGAGCGGCTATTGCGGGACCACATGCGCAACCATGTGAATCACTATAAGTG
CCCTCTGTGTGACATGACCTGCCCGCTGCCTTCCTCCCTCCGCAACCACATGCGCTTTCGTCACAGTGAG
GACCGGCCCTTTAAATGTGACTGTTGTGACTACAGCTGCAAGAATCTTATTGACCTCCAGAAGCACCTGG
ATACCCACAGCGAGGAGCCAGCCTACAGGTGTGATTTTGAGAACTGCACCTTCAGTGCCCGATCCCTCTG
CTCTATCAAGTCCCATTACCGCAAAGTACATGAAGGAGACTCTGAGCCAAGGTACAAATGTCATGTGTGT
GACAAATGCTTCACACGGGGCAACAACCTCACCGTGCACCTTCGCAAGAAGCACCAGTTCAAGTGGCCCT
CAGGGCATCCCCGTTTTCGGTACAAGGAACATGAAGATGGCTATATGCGGCTGCAGCTGGTTCGCTACGA
GAGTGTAGAGCTGACACAGCAACTGCTGCGGCAACCACAAGAGGGATCGGGCCTGGGAACGTCGCTGAAC
GAGAGCAGCCTGCAGGGCATTATTCTAGAAACAGTGCCAGGGGAGCCAGGACGTAAGGAAGAGGAAGAGG
AGGGCAAGGGTAGCGAAGGGACAGCCCTCTCAGCCTCTCAGGACAACCCCAGTTCTGTCATCCACGTGGT
GAATCAGACCAATGCCCAAGGCCAGCAAGAGATCGTCTACTATGTGCTGTCTGAAGCCCCAGGGGAGCCT
CCCCCAGCCCCTGAGCCACCTTCAGGGGGCATCATGGAAAAGCTTCAAGGAATAGCTGAGGAGCCAGAGA
TCCAGATGGTTTGA

Translation (517 aa):
MPPPGKVPRKENLWLQCEWGSCSFVCSTMEKFFEHVTQHLQQHLHGSGEEEEEEEEDDPLEEEFSCLWQE
CGFCSLDSSADLIRHVYFHCYHTKLKQWGLQALQSQADLGPCILDFQSRNVIPDIPDHFLCLWEHCENSF
DNPEWFYRHVEAHSLCCEYEAVGKDNPVVLCGWKGCTCTFKDRSKLREHLRSHTQEKVVACPTCGGMFAN
NTKFLDHIRRQTSLDQQHFQCSHCSKRFATERLLRDHMRNHVNHYKCPLCDMTCPLPSSLRNHMRFRHSE
DRPFKCDCCDYSCKNLIDLQKHLDTHSEEPAYRCDFENCTFSARSLCSIKSHYRKVHEGDSEPRYKCHVC
DKCFTRGNNLTVHLRKKHQFKWPSGHPRFRYKEHEDGYMRLQLVRYESVELTQQLLRQPQEGSGLGTSLN
ESSLQGIILETVPGEPGRKEEEEEGKGSEGTALSASQDNPSSVIHVVNQTNAQGQQEIVYYVLSEAPGEP
PPAPEPPSGGIMEKLQGIAEEPEIQMV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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