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Report for CCDS3458.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3458.1 Public Homo sapiens 4 RHOH 24 110 108 CCDS HistoryNCBI Gene:399Re-query CCDS DB by CCDS ID:3458.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3458.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381799.10 ENSP00000371219.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381799.10Link to Ensembl Protein Viewer:ENSP00000371219.4Re-query CCDS DB by Nucleotide ID:ENST00000381799Re-query CCDS DB by Protein ID:ENSP00000371219
Original member Current member EBI ENST00000511121.6 ENSP00000420866.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000511121.6Link to Ensembl Protein Viewer:ENSP00000420866.2Re-query CCDS DB by Nucleotide ID:ENST00000511121Re-query CCDS DB by Protein ID:ENSP00000420866
Original member Current member EBI ENST00000508513.6 ENSP00000422241.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000508513.6Link to Ensembl Protein Viewer:ENSP00000422241.2Re-query CCDS DB by Nucleotide ID:ENST00000508513Re-query CCDS DB by Protein ID:ENSP00000422241
Original member Current member EBI ENST00000507851.6 ENSP00000423384.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000507851.6Link to Ensembl Protein Viewer:ENSP00000423384.2Re-query CCDS DB by Nucleotide ID:ENST00000507851Re-query CCDS DB by Protein ID:ENSP00000423384
Original member Current member EBI ENST00000505618.6 ENSP00000425010.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000505618.6Link to Ensembl Protein Viewer:ENSP00000425010.1Re-query CCDS DB by Nucleotide ID:ENST00000505618Re-query CCDS DB by Protein ID:ENSP00000425010
Original member Current member EBI ENST00000503941.6 ENSP00000426439.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000503941.6Link to Ensembl Protein Viewer:ENSP00000426439.2Re-query CCDS DB by Nucleotide ID:ENST00000503941Re-query CCDS DB by Protein ID:ENSP00000426439
Original member Current member EBI ENST00000614836.2 ENSP00000478248.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000614836.2Link to Ensembl Protein Viewer:ENSP00000478248.1Re-query CCDS DB by Nucleotide ID:ENST00000614836Re-query CCDS DB by Protein ID:ENSP00000478248
Original member Current member EBI ENST00000503754.6 ENSP00000514769.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000503754.6Link to Ensembl Protein Viewer:ENSP00000514769.1Re-query CCDS DB by Nucleotide ID:ENST00000503754Re-query CCDS DB by Protein ID:ENSP00000514769
Original member Current member EBI ENST00000511967.6 ENSP00000514770.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000511967.6Link to Ensembl Protein Viewer:ENSP00000514770.1Re-query CCDS DB by Nucleotide ID:ENST00000511967Re-query CCDS DB by Protein ID:ENSP00000514770
Original member Current member EBI ENST00000513894.6 ENSP00000514771.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000513894.6Link to Ensembl Protein Viewer:ENSP00000514771.1Re-query CCDS DB by Nucleotide ID:ENST00000513894Re-query CCDS DB by Protein ID:ENSP00000514771
Original member Current member EBI ENST00000515702.2 ENSP00000514772.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000515702.2Link to Ensembl Protein Viewer:ENSP00000514772.1Re-query CCDS DB by Nucleotide ID:ENST00000515702Re-query CCDS DB by Protein ID:ENSP00000514772
Original member Current member EBI ENST00000515718.6 ENSP00000514773.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000515718.6Link to Ensembl Protein Viewer:ENSP00000514773.1Re-query CCDS DB by Nucleotide ID:ENST00000515718Re-query CCDS DB by Protein ID:ENSP00000514773
Original member Current member EBI ENST00000515503.6 ENSP00000514774.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000515503.6Link to Ensembl Protein Viewer:ENSP00000514774.1Re-query CCDS DB by Nucleotide ID:ENST00000515503Re-query CCDS DB by Protein ID:ENSP00000514774
Original member Current member EBI ENST00000503978.2 ENSP00000514775.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000503978.2Link to Ensembl Protein Viewer:ENSP00000514775.1Re-query CCDS DB by Nucleotide ID:ENST00000503978Re-query CCDS DB by Protein ID:ENSP00000514775
Original member Current member NCBI NM_001278359.2 NP_001265288.1 Accepted alive Link to Nucleotide Sequence:NM_001278359.2Link to Protein Sequence:NP_001265288.1Re-query CCDS DB by Nucleotide ID:NM_001278359Re-query CCDS DB by Protein ID:NP_001265288Link to BLAST:NP_001265288.1
Original member Current member NCBI NM_001278360.2 NP_001265289.1 Accepted alive Link to Nucleotide Sequence:NM_001278360.2Link to Protein Sequence:NP_001265289.1Re-query CCDS DB by Nucleotide ID:NM_001278360Re-query CCDS DB by Protein ID:NP_001265289Link to BLAST:NP_001265289.1
Original member Current member NCBI NM_001278361.2 NP_001265290.1 Accepted alive Link to Nucleotide Sequence:NM_001278361.2Link to Protein Sequence:NP_001265290.1Re-query CCDS DB by Nucleotide ID:NM_001278361Re-query CCDS DB by Protein ID:NP_001265290Link to BLAST:NP_001265290.1
Original member Current member NCBI NM_001278362.2 NP_001265291.1 Accepted alive Link to Nucleotide Sequence:NM_001278362.2Link to Protein Sequence:NP_001265291.1Re-query CCDS DB by Nucleotide ID:NM_001278362Re-query CCDS DB by Protein ID:NP_001265291Link to BLAST:NP_001265291.1
Original member Current member NCBI NM_001278363.2 NP_001265292.1 Accepted alive Link to Nucleotide Sequence:NM_001278363.2Link to Protein Sequence:NP_001265292.1Re-query CCDS DB by Nucleotide ID:NM_001278363Re-query CCDS DB by Protein ID:NP_001265292Link to BLAST:NP_001265292.1
Original member Current member NCBI NM_001278364.2 NP_001265293.1 Accepted alive Link to Nucleotide Sequence:NM_001278364.2Link to Protein Sequence:NP_001265293.1Re-query CCDS DB by Nucleotide ID:NM_001278364Re-query CCDS DB by Protein ID:NP_001265293Link to BLAST:NP_001265293.1
Original member Current member NCBI NM_001278365.2 NP_001265294.1 Accepted alive Link to Nucleotide Sequence:NM_001278365.2Link to Protein Sequence:NP_001265294.1Re-query CCDS DB by Nucleotide ID:NM_001278365Re-query CCDS DB by Protein ID:NP_001265294Link to BLAST:NP_001265294.1
Original member Current member NCBI NM_001278366.2 NP_001265295.1 Accepted alive Link to Nucleotide Sequence:NM_001278366.2Link to Protein Sequence:NP_001265295.1Re-query CCDS DB by Nucleotide ID:NM_001278366Re-query CCDS DB by Protein ID:NP_001265295Link to BLAST:NP_001265295.1
Original member Current member NCBI NM_001278367.2 NP_001265296.1 Accepted alive Link to Nucleotide Sequence:NM_001278367.2Link to Protein Sequence:NP_001265296.1Re-query CCDS DB by Nucleotide ID:NM_001278367Re-query CCDS DB by Protein ID:NP_001265296Link to BLAST:NP_001265296.1
Original member Current member NCBI NM_001278368.2 NP_001265297.1 Accepted alive Link to Nucleotide Sequence:NM_001278368.2Link to Protein Sequence:NP_001265297.1Re-query CCDS DB by Nucleotide ID:NM_001278368Re-query CCDS DB by Protein ID:NP_001265297Link to BLAST:NP_001265297.1
Original member Current member NCBI NM_001278369.2 NP_001265298.1 Accepted alive Link to Nucleotide Sequence:NM_001278369.2Link to Protein Sequence:NP_001265298.1Re-query CCDS DB by Nucleotide ID:NM_001278369Re-query CCDS DB by Protein ID:NP_001265298Link to BLAST:NP_001265298.1
Original member Current member NCBI NM_004310.5 NP_004301.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004310.5Link to Protein Sequence:NP_004301.1Re-query CCDS DB by Nucleotide ID:NM_004310Re-query CCDS DB by Protein ID:NP_004301Link to BLAST:NP_004301.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265288.1 191 Q15669 191 100% 0 0
NP_001265289.1 191 Q15669 191 100% 0 0
NP_001265290.1 191 Q15669 191 100% 0 0
NP_001265291.1 191 Q15669 191 100% 0 0
NP_001265292.1 191 Q15669 191 100% 0 0
NP_001265293.1 191 Q15669 191 100% 0 0
NP_001265294.1 191 Q15669 191 100% 0 0
NP_001265295.1 191 Q15669 191 100% 0 0
NP_001265296.1 191 Q15669 191 100% 0 0
NP_001265297.1 191 Q15669 191 100% 0 0
NP_001265298.1 191 Q15669 191 100% 0 0
NP_004301.1 191 Q15669 191 100% 0 0

Chromosomal Locations for CCDS 3458.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 40243387 40243962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGCTGAGTTCCATCAAGTGCGTGTTGGTGGGCGACTCTGCTGTGGGGAAAACCTCTCTGTTGGTGCGCT
TCACCTCCGAGACCTTCCCGGAGGCCTACAAGCCCACAGTGTACGAGAACACAGGGGTGGACGTCTTCAT
GGATGGCATCCAGATCAGCCTGGGCCTCTGGGACACAGCCGGCAATGACGCCTTCAGAAGCATCCGGCCC
CTGTCCTACCAGCAGGCAGACGTGGTGCTGATGTGCTACTCTGTGGCCAACCATAACTCATTCCTGAACT
TGAAGAACAAGTGGATTGGTGAAATTAGGAGCAACTTGCCCTGTACCCCTGTGCTGGTGGTGGCCACCCA
GACTGACCAGCGGGAGATGGGGCCCCACAGGGCCTCCTGCGTCAATGCCATGGAAGGGAAGAAACTGGCC
CAGGATGTCAGAGCCAAGGGCTACCTGGAGTGCTCAGCCCTTAGCAATCGGGGAGTACAGCAGGTGTTTG
AGTGCGCCGTCCGAACTGCCGTCAACCAGGCCAGGAGACGAAACAGAAGGAGGCTCTTCTCCATCAATGA
GTGCAAGATCTTCTAA

Translation (191 aa):
MLSSIKCVLVGDSAVGKTSLLVRFTSETFPEAYKPTVYENTGVDVFMDGIQISLGLWDTAGNDAFRSIRP
LSYQQADVVLMCYSVANHNSFLNLKNKWIGEIRSNLPCTPVLVVATQTDQREMGPHRASCVNAMEGKKLA
QDVRAKGYLECSALSNRGVQQVFECAVRTAVNQARRRNRRRLFSINECKIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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