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Report for CCDS19576.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19576.1 Public Mus musculus 5 2210016L21Rik 23 108 98 CCDS HistoryNCBI Gene:72357Re-query CCDS DB by CCDS ID:19576.1Re-query CCDS DB by GeneID:72357See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19576.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031538.8 ENSMUSP00000031538.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031538.8Link to Ensembl Protein Viewer:ENSMUSP00000031538.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031538Re-query CCDS DB by Protein ID:ENSMUSP00000031538
Original member Current member NCBI NM_028211.1 NP_082487.1 Accepted alive Link to Nucleotide Sequence:NM_028211.1Link to Protein Sequence:NP_082487.1Re-query CCDS DB by Nucleotide ID:NM_028211Re-query CCDS DB by Protein ID:NP_082487Link to BLAST:NP_082487.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082487.1 256 Q3UY34 256 99.6094% 0 1

Chromosomal Locations for CCDS 19576.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 114942208 114942355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114945786 114945828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114946018 114946116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114946291 114946364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114947163 114947253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114947682 114947997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (771 nt):
ATGGTGGCGCCCAGCGGTGCAATGAGCGATTCGGAGAACAGCAGCAGTAGCAGCAGCGATGCGGAGGAAT
TGGCACGCTGTCGCGAGGCGGCTACGCCCGCCTGGGGGCTGGAGCAGCGCCCGGGGGCAGCGGAGAGACC
CGAAGCCGGTGCTGCAGATAAACAAGCACCGACCCCGCAGCCAAGCCGCAGGCATGAGGTGAACCAGCAC
GAGGAAGATGGCAACGACCTTCGGACCACTCCTGAGTTCCGAGCCCACGTGGCCAAGAAACTGGGAGCCC
TGCTGGACAGCTCCATTGCCATCGCAGAAGTTTGGAAGAAGTCGCAAAAGGCAAAGATGCAGCAGGTGGC
AAAGGAGGAGGATGGCTTCCGCCTTTTCTTCACATCCATCCCCGGAGGCCATAAGAAGGAAGCCTCTCCA
AGACCCTGCCGGAAGCGCCAGCCCCCCAGCTCCAGTGAGGACAGCGATGAGGAACTGCAGCGGTGCCGGG
AGGCAGCTGTGTCGGCTTCAGACATTCTCCAGGAGTCAGCCATACACTGCCCTGCCAAGGCAGAGGAGAA
GAAGAAGTTGAAAAAGAAAGCCAAGAAGAAGGTGGACAATGCTGACCTGGCTGCAGCCCCAGGTCTGGAA
CAGGTAAAGGAGGCAGGCGTTGTCAATGGGGACCCGGTGTCGCTTGGGATCCAAAAGAAGAAAAAGAAGA
AGGCCAAGAAATCCAGAGAGGCTCCCCTGTGCCCACCAGCAGAGTGTGCAGCGGCGAAGCCTGAGAACTG
A

Translation (256 aa):
MVAPSGAMSDSENSSSSSSDAEELARCREAATPAWGLEQRPGAAERPEAGAADKQAPTPQPSRRHEVNQH
EEDGNDLRTTPEFRAHVAKKLGALLDSSIAIAEVWKKSQKAKMQQVAKEEDGFRLFFTSIPGGHKKEASP
RPCRKRQPPSSSEDSDEELQRCREAAVSASDILQESAIHCPAKAEEKKKLKKKAKKKVDNADLAAAPGLE
QVKEAGVVNGDPVSLGIQKKKKKKAKKSREAPLCPPAECAAAKPEN


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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