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Report for CCDS46164.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46164.1 Public Homo sapiens 19 ZNF880 24 110 108 CCDS HistoryNCBI Gene:400713Re-query CCDS DB by CCDS ID:46164.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46164.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000422689.3 ENSP00000406318.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000422689.3Link to Ensembl Protein Viewer:ENSP00000406318.2Re-query CCDS DB by Nucleotide ID:ENST00000422689Re-query CCDS DB by Protein ID:ENSP00000406318
Original member Current member NCBI NM_001145434.2 NP_001138906.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145434.2Link to Protein Sequence:NP_001138906.1Re-query CCDS DB by Nucleotide ID:NM_001145434Re-query CCDS DB by Protein ID:NP_001138906Link to BLAST:NP_001138906.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138906.1 577 Q6PDB4-1 577 100% 0 0

Chromosomal Locations for CCDS 46164.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 52369966 52369977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52373111 52373237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52374299 52374427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52383849 52385314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1734 nt):
ATGCTGCGGCGTGGACACTTGGCATTCAGGGACGTGGCCATAGAATTCCCTCAGGAGGAGTGGAAATGTC
TGGACCCTGCTCAGAGGACTTTATACAGGGAAGTGATGGTGGAGAACTACAGGAACCTGGTCTTTCTGGG
AATCTGTCTTCCTGACCTGAGTGTTATCTCCATGTTGGAGCAAAGGAGAGATCCCCGGAATCTGCAGAGT
GAAGTGAAAATAGCAAACAATCCAGGTGGCAGGGAGTGCATCAAAGGTGTGAACGCAGAGAGCAGCTCTA
AATTGGGAAGCAATGCCGGAAACAAGTCTCTTAAAAATCAACTTGGATTAACCTTTCAGTTACATCTGAG
TGAACTGCAGCTATTTCAAGCTGAAAGGAATATTTCTGGATGTAAACATGTCGAAAAACCTATCAACAAT
TCCTTAGTTTCACCACTTCAAAAAATTTATTCTAGTGTCAAATCCCACATTTTAAATAAATACAGAAATG
ATTTTGATGATTCTCCATTTCTCCCACAAGAACAAAAAGCACAAATAAGGGAAAAACCGTGTGAATGTAA
TGAGCATGGCAAAGCCTTTAGAGTGTCTTCAAGACTTGCTAACAATCAAGTAATCCACACTGCAGATAAC
CCTTACAAATGTAATGAATGTGACAAGGTCTTCAGTAACAGTTCAAACCTTGTACAACATCAAAGAATTC
ATACTGGAGAGAAGCCTTACAAGTGTCATGAATGTGGCAAGCTCTTCAATCGAATTTCACTCCTTGCACG
ACATCAGAGAATACATACTGGAGAGAAACCTTACAAATGTCATGAGTGTGGCAAAGTCTTCACTCAAAAT
TCTCACCTTGCAAATCATCACAGAATCCACACTGGAGAGAAACCTTACAAATGTAATGAGTGTGGCAAGG
TCTTCAACAGAAATGCACACCTTGCACGACATCAGAAAATTCATAGTGGAGAGAAACCTTACAAATGTAA
GGAATGTGGCAAAGCATTTTCAGGGGGTTCAGGCCTTACTGCTCATCTTGTAATTCACACTGGAGAGAAA
CTTTACAAATGTAATAAATGTGGCAAGGTCTTCAATCGAAATGCACACCTTACCAGACATCAAAGAATCC
ATACTGGAGAGAAACCTTATGAATGTAAAGAATGTGGCAAGGTCTTCAGGCACAAGTTTTGTCTAACCAA
TCATCATAGAATGCACACGGGAGAGCAACCTTACAAATGTAATGAATGTGGCAAAGCATTTAGAGACTGT
TCAGGCCTTACTGCCCATCTACTAATTCACACTGGAGAGAAACCTTACAAATGTAAAGAATGTGCCAAGG
TCTTCAGGCATAGATTATCCCTAAGCAATCATCAGAGATTTCATACTGGAGAGAAACCTTACAGATGTGA
TGAATGTGGCAAGGACTTCACTCGAAATTCAAACCTTGCAAATCATCACAGAATCCATACTGGAGAGAAA
CCTTACAAATGCAGTGAATGTCACAAAGTCTTTAGTCACAATTCACACCTTGCACGACATAGGCAAATTC
ATACTGGAGAGAAGTCTTACAAATGCAATGAATGTGGCAAGGTCTTCAGCCACAAGTTATACCTAAAAAA
ACATGAGAGAATTCATACTGGGGAGAAACCGTACAGATGTCATGAATGTGGTAAGGACTTCACTCGAAAT
TCAAACCTGGCAAATCATCACAGAATCCATACTGGAGAGAAACCGTACAGATGA

Translation (577 aa):
MLRRGHLAFRDVAIEFPQEEWKCLDPAQRTLYREVMVENYRNLVFLGICLPDLSVISMLEQRRDPRNLQS
EVKIANNPGGRECIKGVNAESSSKLGSNAGNKSLKNQLGLTFQLHLSELQLFQAERNISGCKHVEKPINN
SLVSPLQKIYSSVKSHILNKYRNDFDDSPFLPQEQKAQIREKPCECNEHGKAFRVSSRLANNQVIHTADN
PYKCNECDKVFSNSSNLVQHQRIHTGEKPYKCHECGKLFNRISLLARHQRIHTGEKPYKCHECGKVFTQN
SHLANHHRIHTGEKPYKCNECGKVFNRNAHLARHQKIHSGEKPYKCKECGKAFSGGSGLTAHLVIHTGEK
LYKCNKCGKVFNRNAHLTRHQRIHTGEKPYECKECGKVFRHKFCLTNHHRMHTGEQPYKCNECGKAFRDC
SGLTAHLLIHTGEKPYKCKECAKVFRHRLSLSNHQRFHTGEKPYRCDECGKDFTRNSNLANHHRIHTGEK
PYKCSECHKVFSHNSHLARHRQIHTGEKSYKCNECGKVFSHKLYLKKHERIHTGEKPYRCHECGKDFTRN
SNLANHHRIHTGEKPYR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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