NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS75442.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75442.1 Public Homo sapiens 6 RAB44 24 110 108 CCDS HistoryNCBI Gene:401258Re-query CCDS DB by CCDS ID:75442.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75442.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000612677.6 ENSP00000481054.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000612677.6Link to Ensembl Protein Viewer:ENSP00000481054.1Re-query CCDS DB by Nucleotide ID:ENST00000612677Re-query CCDS DB by Protein ID:ENSP00000481054
Original member Current member NCBI NM_001257357.2 NP_001244286.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001257357.2Link to Protein Sequence:NP_001244286.1Re-query CCDS DB by Nucleotide ID:NM_001257357Re-query CCDS DB by Protein ID:NP_001244286Link to BLAST:NP_001244286.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001244286.1 1021 Q7Z6P3 1021 100% 0 0

Chromosomal Locations for CCDS 75442.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 36704236 36704442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36713828 36713939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36715479 36715653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36717273 36717419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36718028 36718118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36718493 36718588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36720363 36720550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36721151 36722733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36725862 36725943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36727577 36727691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36728700 36728801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36730673 36730749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36732003 36732093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3066 nt):
ATGGAGACTGGACAGAGAACATCTCGAAAAGTCCGGAAGCTGGGCTCCAACCGGCGGCGGCAGACAAGAG
AGCCAGCTGATGGTGAAGGCGCTGCAGTGGCCCCAGAGCCAGAGTCTTGGTCCTCTCAGGCAGCGGCAGA
ACTGCAGGCCTTCTTCCAGGACTGTGGTGCCAAGGAGAGGGGCTTTGTCACCCGCGAGGACCTGGCGGTG
GCCAAGTTCAGCTTCCTGGGCAGCAAGGAAGAGTCAGAGATGATCTTCGACTGGGTGGATGTGGAGCGGA
AGGGACACCTGTCCCTTGAAGAATTCAGCTCTGGACTCAAAAACATCTTTGGCTCCAGCCAGAGCCCCCA
CAGGCTCCGCAGAAGGAAGCCACTGCCCTCTAAGCGGGTATCTGCTACCACCAGCTTCCCAGCTCTGGAG
GAGGCGGATGCTGAGGAGAAGGAGGCGTTCCTTGCCTTCATGGAGCAGCTGGGGACTGGACACTTACTTC
CCAAGCAGATGGAAATCTGGCAACTGTGGGGGCAGCTGCGGCAGGAGGAGCCCCAGCTGGCAGGCAACCT
GGCAGGCTTTCTGGCCAAGATGACCAGCCGCCTGCAGGAGGCCCAGGCGGACAAGGAGGCCCTGGAGCTG
ACCCTGAGGAAGCGTGACTCTGACCACCACCGCGAGGTCCAGCAGCTCTATGAGGAGATGGAGCAGCAGA
TCCGCCAGGAGAAGCAGCAGCTGCAGGCTGAGAGCGACTCTCGGGGCCTGGCCCTCACCTCCCAGATGCA
GGACGTCCTAGAGGCCAAGGAGCGCGAGGTGCAGCGACTAGCTGAGGGCCAGAGGGAGCTGGAGGCCCAG
CTCTCCCACCTCAGGAGCACACATCAGGAGGCTGCCTCAGAGAACCAGCAGCTGCAGGAGGCCAAGCGTG
ACCTGGCTGGGCGGCTGGAGGAGGTGCGGGGGCAGCTGCAGGTGACCAGGGGGCGCCTGGACGCCGCCAG
GGGCCGGGTGTCCTGGCAGGTGGAGGAGAAACTGAGTTTTCCTGGAGCGGGTGAGAAGACCCCAGACCCT
CAGGCTGCCTCCCCTGAGGAGGCCCCCCTGCCTGGGCTATTTGGGGACAACGATGACTGGGACCAGCTAC
TGAGCAACTTTGGCAGCCCTCCGCACGGAGCCCTGCAGCTCTGCTGGAGCCCGCCCCCGACCCCAAGAGC
CACCTCAGGCCCCCAGACACCCCGTGTGGTCAGGCAGATCTCCATCTCGGAGCCACAGGCTTTTCTATTT
GGTCAGGAGCCATCTTCAGATCCAGATGGGGCTCCAAGGACCCCACCTGGGGTGACTTTCAGCGCCAAGG
ACAATAAAGGAGTGGACCCACATGAGCAGGACATTAGAGCAGAGCAGCCTGTTGAACCGCACGACCCGGA
CCCCAACCAGGAGCCAGGGTCCACACCCGAGGGCCGCCTCCTCTGGGGTCTCTCAGGAAGCCTGGTGGCA
CCTGCATTCAAAGTGCTCATTCCTTTGGAGGATGGGCCCCCTCCCCCTGCGAACTCTCCCCCTCCCCAGG
CCCCAGCTGGGTCCAGCAAACAGATCCAGGCCTCAGACCCAGATGACAAGGGCCCTGGGTCTTGGGCTCC
TCCCAGCGGGGCTCAGCCTGGGGCTGGAGCAGGACCCCAGGAACCCACACAAACCCCTCCCACCATGACT
GAGCGGGAAACCCAGCCCGGACCCTCACCCACAACTGCCCTCACAGGAGTGGGCCCAGCCAAGCCGCCCA
GGCAGAGAGATGCCCTCCAGCAGGACCTGCATGCCACTGGCTCTGAGCCAAGACTGGGGACCCAGAGGGC
TAGAGCCCTCACCCTGGGGCCAGCTGAGCCCTTCCAGGGCCTGGAATTTGTGGGTCCGGTGCCCACAGAG
AGGCTGGAGCAGGGCCAGGCGGGCCCAGCGGTGCAGGAGGGCCTTCCTGAGGGGCTAAGAGAAGCTCATG
GCCAGGTCCTTGGGCTGGGTGAGCTGTCTGCCTTCCCCCACCAGGAGCTGGAAGAGGAACCCAGGTCTGA
GGAAGGAAAACAAGAGGGCAGAGGTGGGCAGGACCTCAGTTCAGAGCAGTCAGAGCAGTCGGTTGAGGCT
CACGGCCTAGAAACTGCGCATTCGGAACTCCCCCAGCAAGACTCTCTGCTTGTTTCTCTCCCATCTGCCA
CACCACAGGCTCAGGTGGAAGCAGAAGGCCCCACTCCTGGAAAATCGGCACCTCCAAGGGGCTCTCCTCC
CAGGGGGGCTCAGCCTGGGGCTGGAGCAGGACCCCAGGAACCCACGCAAACCCCTCCCACCATGGCTGAG
CAGGAAGCCCAACCCAGGCCATCCCTCACGACTGCTCACGCAGAAGAACAAGGCCCGCCTCACTCCAGGG
AACCAAGGGCAGAGAGCAGGCTTGAAGATCCAGGAATGGACTCCAGGGAAGCTGGGCTGACCCCATCCCC
GGGAGACCCCATGGCTGGAGGGGGACCCCAGGCCAACCCTGATTACCTCTTCCATGTCATCTTTCTGGGA
GACTCCAACGTGGGCAAAACATCCTTCCTGCACCTGCTGCACCAGAATTCTTTCGCCACCGGATTGACAG
CTACCGTGGGAGTAGATTTTCGGGTCAAAACCTTGCTGGTGGACAACAAGTGCTTTGTGCTGCAGCTCTG
GGACACAGCTGGCCAAGAGAGGTACCACAGTATGACGCGACAGCTGCTCCGCAAGGCTGACGGGGTGGTG
CTCATGTACGACATCACCTCCCAGGAGAGCTTTGCCCACGTGCGCTACTGGCTAGACTGTCTCCAGGATG
CAGGGTCGGATGGGGTGGTCATCCTTCTCCTGGGAAACAAGATGGACTGTGAGGAGGAACGGCAAGTGTC
CGTGGAAGCTGGGCAGCAACTGGCCCAGGAACTGGGGGTCTATTTTGGGGAGTGCAGTGCCGCCTTGGGT
CACAACATCCTGGAGCCTGTAGTAAACCTGGCCAGGTCACTCAGGATGCAAGAAGAAGGCCTGAAGGACT
CGCTGGTGAAGGTGGCCCCCAAGAGGCCGCCCAAGAGATTCGGCTGTTGCTCCTGA

Translation (1021 aa):
METGQRTSRKVRKLGSNRRRQTREPADGEGAAVAPEPESWSSQAAAELQAFFQDCGAKERGFVTREDLAV
AKFSFLGSKEESEMIFDWVDVERKGHLSLEEFSSGLKNIFGSSQSPHRLRRRKPLPSKRVSATTSFPALE
EADAEEKEAFLAFMEQLGTGHLLPKQMEIWQLWGQLRQEEPQLAGNLAGFLAKMTSRLQEAQADKEALEL
TLRKRDSDHHREVQQLYEEMEQQIRQEKQQLQAESDSRGLALTSQMQDVLEAKEREVQRLAEGQRELEAQ
LSHLRSTHQEAASENQQLQEAKRDLAGRLEEVRGQLQVTRGRLDAARGRVSWQVEEKLSFPGAGEKTPDP
QAASPEEAPLPGLFGDNDDWDQLLSNFGSPPHGALQLCWSPPPTPRATSGPQTPRVVRQISISEPQAFLF
GQEPSSDPDGAPRTPPGVTFSAKDNKGVDPHEQDIRAEQPVEPHDPDPNQEPGSTPEGRLLWGLSGSLVA
PAFKVLIPLEDGPPPPANSPPPQAPAGSSKQIQASDPDDKGPGSWAPPSGAQPGAGAGPQEPTQTPPTMT
ERETQPGPSPTTALTGVGPAKPPRQRDALQQDLHATGSEPRLGTQRARALTLGPAEPFQGLEFVGPVPTE
RLEQGQAGPAVQEGLPEGLREAHGQVLGLGELSAFPHQELEEEPRSEEGKQEGRGGQDLSSEQSEQSVEA
HGLETAHSELPQQDSLLVSLPSATPQAQVEAEGPTPGKSAPPRGSPPRGAQPGAGAGPQEPTQTPPTMAE
QEAQPRPSLTTAHAEEQGPPHSREPRAESRLEDPGMDSREAGLTPSPGDPMAGGGPQANPDYLFHVIFLG
DSNVGKTSFLHLLHQNSFATGLTATVGVDFRVKTLLVDNKCFVLQLWDTAGQERYHSMTRQLLRKADGVV
LMYDITSQESFAHVRYWLDCLQDAGSDGVVILLLGNKMDCEEERQVSVEAGQQLAQELGVYFGECSAALG
HNILEPVVNLARSLRMQEEGLKDSLVKVAPKRPPKRFGCCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH