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Report for CCDS43908.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43908.1 Public Homo sapiens 9 LCNL1 24 110 108 CCDS HistoryNCBI Gene:401562Re-query CCDS DB by CCDS ID:43908.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43908.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000408973.3 ENSP00000386162.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000408973.3Link to Ensembl Protein Viewer:ENSP00000386162.2Re-query CCDS DB by Nucleotide ID:ENST00000408973Re-query CCDS DB by Protein ID:ENSP00000386162
Original member Current member NCBI NM_207510.4 NP_997393.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_207510.4Link to Protein Sequence:NP_997393.3Re-query CCDS DB by Nucleotide ID:NM_207510Re-query CCDS DB by Protein ID:NP_997393Link to BLAST:NP_997393.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997393.3 164 Q6ZST4 164 100% 0 0

Chromosomal Locations for CCDS 43908.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 136983587 136983708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136984490 136984563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136984713 136985011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (495 nt):
ATGGTCGGGGTGGTGTCAGATGACCAGGACTTCCTGGACTCCAAGGACACCATGAAGATGGCTGTGGTCT
TAGTGACCCCCTTGGGGAATGGTGACCTGGCCCTCAAGTTTGGATACCCCACGCCCCATGGCGGGTGCCA
GAAAATGGACACGACCTTCACCGAGGGTGCTGTACCGGGGCAGTTCAGCAACCCAGCCATGGCCCTGAGT
GACATCCGAGTGGCCTTCTCCGACTACCAGCACTTTGCCTTGCTGTACTTGGAGATGCGGAAAGGGGGCC
TGCGGAACCAGTGGCTGCAGCTCTACGGTGGGCGGGCTGCGGGGCGGAGACCCAGACACCCCCGCTTCGG
GTCTGGGATGTCACCCCTGTGCCTGCACCAGCCCTTTCTGCACGCGGAAGGTGGAACCGCTGGCTCCTGG
TGTCTGTGGCCGCGGGTCCCGGCCCCTCCCTGCCCCTCTCTCCCTCTCTTCGCCCCTCCAGCCCCTTCCC
TTTAG

Translation (164 aa):
MVGVVSDDQDFLDSKDTMKMAVVLVTPLGNGDLALKFGYPTPHGGCQKMDTTFTEGAVPGQFSNPAMALS
DIRVAFSDYQHFALLYLEMRKGGLRNQWLQLYGGRAAGRRPRHPRFGSGMSPLCLHQPFLHAEGGTAGSW
CLWPRVPAPPCPSLPLFAPPAPSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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