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Report for CCDS5245.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5245.1 Public Homo sapiens 6 IPCEF1 24 110 108 CCDS HistoryNCBI Gene:26034Re-query CCDS DB by CCDS ID:5245.1Re-query CCDS DB by GeneID:26034See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5245.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265198.8 ENSP00000265198.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000265198.8Link to Ensembl Protein Viewer:ENSP00000265198.4Re-query CCDS DB by Nucleotide ID:ENST00000265198Re-query CCDS DB by Protein ID:ENSP00000265198
Original member Current member NCBI NM_001394802.1 NP_001381731.1 Accepted alive Link to Nucleotide Sequence:NM_001394802.1Link to Protein Sequence:NP_001381731.1Re-query CCDS DB by Nucleotide ID:NM_001394802Re-query CCDS DB by Protein ID:NP_001381731Link to BLAST:NP_001381731.1
Original member Current member NCBI NM_015553.3 NP_056368.1 Accepted alive Link to Nucleotide Sequence:NM_015553.3Link to Protein Sequence:NP_056368.1Re-query CCDS DB by Nucleotide ID:NM_015553Re-query CCDS DB by Protein ID:NP_056368Link to BLAST:NP_056368.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001381731.1 437 Q8WWN9-1 437 100% 0 0
NP_056368.1 437 Q8WWN9-1 437 100% 0 0

Chromosomal Locations for CCDS 5245.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 154159828 154160040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154167920 154168113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154199668 154200040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154212770 154212855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154214218 154214276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154221257 154221328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154223170 154223243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154246591 154246760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154247449 154247485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154265912 154265947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGACATCATACATGGCTATTGATGGCAGTGCTCTTGTTCCCTTGCGTCAGAAGCCCAGGAGGAAAACTC
AAGGTTTTCTCACGATGAGTCGGAGGAGGATATCGTGTAAAGATCTGGGCCATGCTGACTGCCAAGGGTG
GCTGTATAAGAAAAAGGAAAAGGGAAGTTTCCTAAGCAACAAATGGAAAAAGTTCTGGGTGATACTGAAG
GGGTCGTCACTGTACTGGTATAGCAATCAAATGGCAGAGAAAGCTGATGGATTTGTCAACCTGCCTGATT
TCACTGTGGAAAGAGCATCTGAATGCAAGAAAAAGCATGCTTTTAAGATCAGCCATCCACAGATCAAGAC
CTTTTATTTTGCAGCTGAGAATGTGCAGGAAATGAACGTGTGGTTAAATAAACTTGGATCGGCTGTAATC
CATCAGGAATCCACTACAAAGGATGAAGAATGTTACAGTGAAAGTGAACAGGAAGATCCAGAAATAGCTG
CGGAGACACCACCCCCTCCTCACGCTTCCCAGACTCAGTCTTTGACTGCACAGCAGGCATCTTCATCCTC
ACCCAGCCTGAGTGGAACGTCGTATTCTTTCTCTTCCCTGGAAAATACAGTGAAGACACCCAGCAGTTTT
CCTTCCTCCTTATCTAAAGAGAGACAATCCTTGCCTGACACAGTTAACAGTTTGTCTGCTGCTGAAGATG
AGGGACAACCAATAACGTTTGCTGTGCAAGTTCATTCACCTGTACCCTCAGAGGCAGGCATCCACAAGGC
CCTGGAAAACAGTTTTGTCACATCAGAAAGTGGATTTTTGAACTCTTTATCTAGTGATGATACTTCTTCA
TTGAGTAGCAATCATGACCATCTTACTGTCCCAGATAAGCCTGCTGGATCAAAGATCATGGACAAAGAAG
AGACAAAAGTGTCTGAAGATGATGAAATGGAGAAGCTGTACAAATCATTAGAGCAAGCTAGTCTATCTCC
TCTTGGGGACCGACGACCTTCGACTAAAAAGGAGTTGAGAAAATCCTTTGTTAAGCGGTGTAAAAATCCA
TCTATAAACGAGAAACTCCACAAAATCCGAACATTGAATAGCACATTAAAGTGTAAAGAACATGATCTGG
CCATGATTAACCAGTTGCTGGATGACCCGAAGCTGACAGCCAGGAAATACAGAGAGTGGAAAGTCATGAA
CACCCTGCTGATCCAGGACATCTATCAGCAGCAGCGGGCTTCGCCTGCCCCTGATGACACTGATGACACC
CCCCAGGAACTCAAGAAATCACCTTCTTCTCCCTCTGTTGAAAATTCCATTTGA

Translation (437 aa):
MTSYMAIDGSALVPLRQKPRRKTQGFLTMSRRRISCKDLGHADCQGWLYKKKEKGSFLSNKWKKFWVILK
GSSLYWYSNQMAEKADGFVNLPDFTVERASECKKKHAFKISHPQIKTFYFAAENVQEMNVWLNKLGSAVI
HQESTTKDEECYSESEQEDPEIAAETPPPPHASQTQSLTAQQASSSSPSLSGTSYSFSSLENTVKTPSSF
PSSLSKERQSLPDTVNSLSAAEDEGQPITFAVQVHSPVPSEAGIHKALENSFVTSESGFLNSLSSDDTSS
LSSNHDHLTVPDKPAGSKIMDKEETKVSEDDEMEKLYKSLEQASLSPLGDRRPSTKKELRKSFVKRCKNP
SINEKLHKIRTLNSTLKCKEHDLAMINQLLDDPKLTARKYREWKVMNTLLIQDIYQQQRASPAPDDTDDT
PQELKKSPSSPSVENSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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