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Report for CCDS56769.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56769.1 Public Mus musculus 11 Tnip1 23 108 98 CCDS HistoryNCBI Gene:57783Re-query CCDS DB by CCDS ID:56769.1Re-query CCDS DB by GeneID:57783See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56769.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108885.7 ENSMUSP00000104513.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108885.7Link to Ensembl Protein Viewer:ENSMUSP00000104513.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108885Re-query CCDS DB by Protein ID:ENSMUSP00000104513
Original member Current member EBI ENSMUST00000108886.7 ENSMUSP00000104514.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108886.7Link to Ensembl Protein Viewer:ENSMUSP00000104514.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108886Re-query CCDS DB by Protein ID:ENSMUSP00000104514
Original member Current member NCBI NM_001199276.2 NP_001186205.1 Accepted alive Link to Nucleotide Sequence:NM_001199276.2Link to Protein Sequence:NP_001186205.1Re-query CCDS DB by Nucleotide ID:NM_001199276Re-query CCDS DB by Protein ID:NP_001186205Link to BLAST:NP_001186205.1
Original member Current member NCBI NM_001271455.1 NP_001258384.1 Accepted alive Link to Nucleotide Sequence:NM_001271455.1Link to Protein Sequence:NP_001258384.1Re-query CCDS DB by Nucleotide ID:NM_001271455Re-query CCDS DB by Protein ID:NP_001258384Link to BLAST:NP_001258384.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186205.1 594 Q9WUU8-2 594 100% 0 0
NP_001258384.1 594 Q9WUU8-2 594 100% 0 0

Chromosomal Locations for CCDS 56769.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 54911537 54911571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54915497 54915587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54916796 54916987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54917256 54917321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54917800 54917925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54918606 54918737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54920761 54920889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54924098 54924229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54924376 54924441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54926704 54926793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54929095 54929218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54930765 54930859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54933989 54934180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54936461 54936541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54937947 54938065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 54939598 54939712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1785 nt):
ATGGAAGCGTCCAGACTCCGGCAGAAGGCAGAGGAGCTGGTCAAGGACAGCGAGCTGTCACCACCGACAT
CTGCCCCCTCCTTGGTCTCCTTTGATGACCTGGCTGAGCTCACAGGACAGGATACAAAGGTCCAGGTACA
TCCTGCTACCAGCACTGCCGCCACCACCACCGCCACCGCCACCACGGGAAACTCCATGGAGAAGCCCGAG
CCAGCCTCCAAATCTCCGTCCAATGGCGCCTCCTCGGACTTTGAAGTGGTCCCTACTGAGGAGCAGAATT
CACCCGAAACTGGCAGCCACCCTACGAACATGATGGACCTGGGGCCCCCACCCCCAGAGGACAGCAACCT
GAAGCTCCACCTGCAGCGCCTGGAGACCACCCTTAGCGTGTGTGCAGAGGAGCCAGACCACAGCCAGCTC
TTCACCCACCTGGGCCGCATGGCCCTCGAGTTCAACAGGTTGGCCTCCAAAGTGCATAAAAATGAGCAGC
GCACCTCCATCCTGCAGACCTTATGTGAGCAGCTGCGCCAGGAGAATGAAGCCCTGAAGGCCAAGCTGGA
CAAGGGCCTGGAACAGCGGGATCTGGCTGCTGAGAGGCTGCGGGAGGAAAACACGGAGCTCAAGAAACTG
TTGATGAACAGCAGCTGCAAAGAGGGACTCTGTGGGCAGCCCAGCTCCCCAAAGCCAGAGGGTGCTGGCA
AGAAGGGCGTGGCTGGACAGCAGCAGGCCAGTGTGATGGCGAGTAAAGTCCCTGAAGCGGGGGCCTTTGG
AGCAGCTGAGAAGAAGGTGAAGTTGCTAGAACAGCAACGCATGGAGCTGCTGGAAGTGAACAAGCAGTGG
GACCAGCATTTCCGGTCCATGAAGCAGCAGTATGAGCAGAAGATCACAGAGCTTCGCCAGAAGCTGGTGG
ACCTGCAGAAACAGGTAACTGAGCTGGAGGCCGAACGGGAGCAGAAGCAGCGTGACTTTGACCGGAAACT
CCTCCTGGCCAAATCGAAGATAGAGATGGAAGAGACCGACAAGGAGCAGCTGACAGCAGAGGCCAAGGAA
CTGCGCCAGAAGGTCAGGTACCTACAGGATCAGCTGAGCCCGCTCACAAGGCAACGAGAATACCAGGAGA
AGGAGATCCAGCGGCTCAATAAGGCCCTGGAGGAGGCCCTCAGCATCCAGGCCTCTCCATCATCTCCGCC
TGCAGCTTTTGGGAGTCCAGAAGGCGTTGGGGGCCATCTGAGGAAGCAGGAACTAGTGACACAGAATGAG
TTGCTGAAACAGCAGGTAAAGATCTTTGAAGAGGACTTCCAGAGGGAACGGAGTGACCGTGAACGCATGA
ATGAAGAGAAGGAGGAGCTGAAGAAGCAAGTAGAGAAGCTGCAGGCCCAGGTCACCCTGACTAATGCCCA
GCTCAAAACTCTCAAAGAGGAGGAGAAGGCCAAGGAAGCCCTCAAACAGCAGAAGAGGAAAGCAAAGGCT
TCGGGAGAGCGCTACCACATGGAACCCCACCCTGAGCACGTCTGCGGCGCCTATCCCTATGCCTACCCAC
CCATGCCAGCCATGGTACCTCACCATGCCTACAAGGACTGGTCCCAGATCCGATACCCTCCACCCCCTGT
GCCCATGGAGCACCCGCCCCCACACCCCAACTCTCGCCTCTTCCATCTGCCGGAGTACACCTGGCGTCCA
CCCTGTGCAGGGATTCGGAATCAGAGCTCTCAAGTGATGGACCCGCCCCCAGACAGGCCTGCAGAGCCAG
AGTCTGCAGACAATGACTGTGATGGGCCCCAGTGA

Translation (594 aa):
MEASRLRQKAEELVKDSELSPPTSAPSLVSFDDLAELTGQDTKVQVHPATSTAATTTATATTGNSMEKPE
PASKSPSNGASSDFEVVPTEEQNSPETGSHPTNMMDLGPPPPEDSNLKLHLQRLETTLSVCAEEPDHSQL
FTHLGRMALEFNRLASKVHKNEQRTSILQTLCEQLRQENEALKAKLDKGLEQRDLAAERLREENTELKKL
LMNSSCKEGLCGQPSSPKPEGAGKKGVAGQQQASVMASKVPEAGAFGAAEKKVKLLEQQRMELLEVNKQW
DQHFRSMKQQYEQKITELRQKLVDLQKQVTELEAEREQKQRDFDRKLLLAKSKIEMEETDKEQLTAEAKE
LRQKVRYLQDQLSPLTRQREYQEKEIQRLNKALEEALSIQASPSSPPAAFGSPEGVGGHLRKQELVTQNE
LLKQQVKIFEEDFQRERSDRERMNEEKEELKKQVEKLQAQVTLTNAQLKTLKEEEKAKEALKQQKRKAKA
SGERYHMEPHPEHVCGAYPYAYPPMPAMVPHHAYKDWSQIRYPPPPVPMEHPPPHPNSRLFHLPEYTWRP
PCAGIRNQSSQVMDPPPDRPAEPESADNDCDGPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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