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Report for CCDS14116.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14116.1 Public Homo sapiens XY AKAP17A 24 110 108 CCDS HistoryNCBI Gene:8227Re-query CCDS DB by CCDS ID:14116.1Re-query CCDS DB by GeneID:8227See the combined annotation on chromosome X in Sequence ViewerSee the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14116.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000313871.9 ENSP00000324827.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000313871.9Link to Ensembl Protein Viewer:ENSP00000324827.3Re-query CCDS DB by Nucleotide ID:ENST00000313871Re-query CCDS DB by Protein ID:ENSP00000324827
Original member Current member NCBI NM_005088.3 NP_005079.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005088.3Link to Protein Sequence:NP_005079.2Re-query CCDS DB by Nucleotide ID:NM_005088Re-query CCDS DB by Protein ID:NP_005079Link to BLAST:NP_005079.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005079.2 695 Q02040-1 695 100% 0 0

Chromosomal Locations for CCDS 14116.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11) On '+' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
X 1593463 1594224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1595384 1595532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1599192 1599432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1600659 1601594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

Chromosome Start Stop Links
Y 1593463 1594224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1595384 1595532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1599192 1599432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1600659 1601594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2088 nt):
ATGGCAGCGGCTACCATCGTGCACGACACGTCTGAGGCCGTGGAGCTCTGCCCTGCTTACGGCTTGTACC
TG
AAGCCCATCACCAAGATGACCATCAGCGTGGCACTCCCGCAGCTGAAGCAGCCGGGGAAGTCCATCTC
C
AACTGGGAGGTGATGGAGAGGCTGAAGGGCATGGTGCAGAACCACCAGTTCTCCACGCTGCGTATTTCC
AAG
AGCACCATGGACTTCATCCGCTTCGAGGGGGAGGTGGAGAACAAGAGCCTGGTCAAGTCTTTTCTGG
CC
TGCCTGGACGGCAAGACCATCAAGCTCAGCGGCTTCTCCGACATCCTGAAGGTGCGCGCGGCCGAGTT
C
AAGATCGACTTCCCCACCCGCCACGACTGGGACTCCTTCTTCCGCGACGCCAAGGACATGAACGAGACC
CTG
CCGGGGGAGCGGCCGGACACCATCCACCTGGAGGGGCTGCCCTGCAAGTGGTTCGCCCTGAAGGAGT
CG
GGCTCCGAGAAGCCCAGCGAGGACGTCCTGGTCAAGGTGTTTGAGAAGTTCGGGGAGATCCGGAATGT
G
GACATCCCCATGCTGGACCCCTACCGGGAGGAGATGACGGGCCGCAACTTCCACACCTTCAGTTTCGGG
GGG
CACTTGAACTTCGAGGCCTATGTGCAGTACCGCGAGTACATGGGCTTCATCCAGGCCATGAGCGCCC
TG
CGCGGGATGAAACTCATGTACAAGGGCGAGGACGGCAAGGCCGTGGCCTGCAACATCAAGGTTTCTTT
T
GATTCGACCAAACACCTGAGTGATGCCTCAATTAAGAAGCGGCAGCTGGAGAGGCAGAAGCTTCAGGAA
CTG
GAGCAGCAAAGAGAAGAACAAAAGCGCAGAGAGAAGGAAGCGGAGGAGAGGCAGCGAGCGGAGGAAA
G
G
AAACAAAAGGAGCTGGAAGAGCTGGAGCGAGAGAGGAAAAGAGAAGAGAAGCTTCGCAAGAGGGAGCA
G
AAGCAGAGGGACCGTGAGCTGCGCCGGAATCAGAAGAAGCTGGAGAAGCTGCAGGCGGAGGAGCAGAAG
CAG
CTGCAGGAGAAGATCAAGCTGGAGGAGCGCAAGCTGCTGCTGGCCCAGAGGAACCTGCAGTCCATCC
GG
CTCATCGCCGAGCTGCTCAGCAGAGCCAAGGCTGTGAAGCTACGGGAACAGGAGCAGAAGGAGGAGAA
G
CTGAGGCTCCAGCAGCAGGAGGAGCGGCGGCGGCTGCAGGAGGCCGAGCTGCGGCGCGTGGAGGAGGAG
AAG
GAGCGCGCGCTGGGCCTGCAGCGGAAAGAGCGGGAGCTGCGCGAGCGGCTGCTGAGCATCCTGCTGA
GC
AAGAAGCCGGACGACAGCCACACACACGACGAGCTGGGCGTGGCACACGCCGACCTGCTGCAGCCCGT
C
CTGGACATCCTGCAGACCGTGTCGTCCGGCTGTGTGAGCGCCACCACGCTGCACCCCCTCGGGGGCCAG
CCC
CCGGCCGGTGCCCCCAAGGAGAGCCCGGCCCACCCAGAGGCCGACGGCGCTCCCAAAAGCGTGAACG
GG
AGCGTGGCCGAGGAGGCCCCATGCAAGGAGGTTCAGAGCTCCTGTCGTGTGGTCCCCGAGGATGGCTC
T
CCAGAGAAGAGGTGCCCGGGCGGCGTCCTCTCCTGCATTCCTGACAACAACCAACAGCCCAAGGGCATC
CCT
GCCTGCGAGCAGAATGTCTCCAGAAAGGACACCCGGTCAGAACAGGACAAGTGCAACCGGGAGCCCA
GC
AAGGGCCGGGGCCGGGCCACCGGAGACGGGCTTGCTGACCGGCACAAGCGGGAGAGGAGCCGGGCCAG
G
CGGGCCAGCAGCAGGGAGGACGGGAGGCCACGCAAGGAGCGGCGGCCCCACAAGAAGCACGCCTACAAG
GAT
GACAGCCCCCGCCGGCGCAGCACGAGCCCGGACCACACCCGGTCCCGGAGGTCCCACAGCAAAGACA
GG
CACCGGAGGGAGCGGAGCCGGGAGCGGAGGGGCAGCGCCAGCAGGAAGCACAGCCGCCACCGCCGCCG
A
AGCGAGCGGTCGCGCTCCCGGTCCCCGAGCAGGCACCGCAGTACCTGGAACAGGTAA


Translation (695 aa):
MAAATIVHDTSEAVELCPAYGLYLKPITKMTISVALPQLKQPGKSISNWEVMERLKGMVQNHQFSTLRIS
K
STMDFIRFEGEVENKSLVKSFLACLDGKTIKLSGFSDILKVRAAEFKIDFPTRHDWDSFFRDAKDMNET
L
PGERPDTIHLEGLPCKWFALKESGSEKPSEDVLVKVFEKFGEIRNVDIPMLDPYREEMTGRNFHTFSFG
G
HLNFEAYVQYREYMGFIQAMSALRGMKLMYKGEDGKAVACNIK
VSFDSTKHLSDASIKKRQLERQKLQE
L
EQQREEQKRREKEAEERQRAEE
RKQKELEELERERKREEKLRKREQKQRDRELRRNQKKLEKLQAEEQK
Q
LQEKIKLEERKLLLAQRNLQSIRLIAELLSRAK
AVKLREQEQKEEKLRLQQQEERRRLQEAELRRVEEE
K
ERALGLQRKERELRERLLSILLSKKPDDSHTHDELGVAHADLLQPVLDILQTVSSGCVSATTLHPLGGQ
P
PAGAPKESPAHPEADGAPKSVNGSVAEEAPCKEVQSSCRVVPEDGSPEKRCPGGVLSCIPDNNQQPKGI
P
ACEQNVSRKDTRSEQDKCNREPSKGRGRATGDGLADRHKRERSRARRASSREDGRPRKERRPHKKHAYK
D
DSPRRRSTSPDHTRSRRSHSKDRHRRERSRERRGSASRKHSRHRRRSERSRSRSPSRHRSTWNR




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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