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Report for CCDS28353.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28353.1 Public Mus musculus 16 Hmgn1 23 108 98 CCDS HistoryNCBI Gene:15312Re-query CCDS DB by CCDS ID:28353.1Re-query CCDS DB by GeneID:15312See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28353.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050884.15 ENSMUSP00000061012.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050884.15Link to Ensembl Protein Viewer:ENSMUSP00000061012.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000050884Re-query CCDS DB by Protein ID:ENSMUSP00000061012
Original member Current member NCBI NM_008251.3 NP_032277.3 Accepted alive Link to Nucleotide Sequence:NM_008251.3Link to Protein Sequence:NP_032277.3Re-query CCDS DB by Nucleotide ID:NM_008251Re-query CCDS DB by Protein ID:NP_032277Link to BLAST:NP_032277.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032277.3 96 P18608 96 100% 0 0

Chromosomal Locations for CCDS 28353.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 96122376 96122417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96124723 96124845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96127153 96127203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96127311 96127340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96127432 96127461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 96127590 96127604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (291 nt):
ATGCCCAAGAGGAAGGTTAGCGCGGATGGAGCCGCCAAGGCGGAGCCCAAGCGCCGCTCCGCGAGGCTGT
CGGCCAAGCCCGCCCCTGCCAAGGTGGACGCGAAGCCGAAAAAGGCCGCGGGAAAGGATAAAGCATCAGA
CAAAAAAGTGCAGATAAAAGGGAAGAGGGGAGCGAAGGGCAAACAGGCTGACGTGGCTGACCAGCAAACC
ACAGAGCTGCCTGCAGAAAATGGAGAGACGGAAAACCAGAGTCCAGCCTCTGAAGAAGAGAAAGAAGCTA
AGTCCGACTAA

Translation (96 aa):
MPKRKVSADGAAKAEPKRRSARLSAKPAPAKVDAKPKKAAGKDKASDKKVQIKGKRGAKGKQADVADQQT
TELPAENGETENQSPASEEEKEAKSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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