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Report for CCDS61361.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
61361.1 Public Homo sapiens 13 ITGBL1 24 110 108 CCDS HistoryNCBI Gene:9358Re-query CCDS DB by CCDS ID:61361.1Re-query CCDS DB by GeneID:9358See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 61361.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376162.7 ENSP00000365332.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376162.7Link to Ensembl Protein Viewer:ENSP00000365332.3Re-query CCDS DB by Nucleotide ID:ENST00000376162Re-query CCDS DB by Protein ID:ENSP00000365332
Original member Current member NCBI NM_001271756.2 NP_001258685.1 Accepted alive Link to Nucleotide Sequence:NM_001271756.2Link to Protein Sequence:NP_001258685.1Re-query CCDS DB by Nucleotide ID:NM_001271756Re-query CCDS DB by Protein ID:NP_001258685Link to BLAST:NP_001258685.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258685.1 401 O95965-3 401 100% 0 0

Chromosomal Locations for CCDS 61361.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 101489964 101490000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 101567699 101567845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 101575424 101575546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 101579287 101579427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 101583216 101583356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 101598153 101598299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 101692585 101692701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 101706756 101706902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 101714438 101714551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 101715563 101715654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1206 nt):
ATGAACTTAGTTGCAGTGATGGGAGCATTTAATAAAGGCCATGGTAAGTGTGACTGTGGCAAGTGCAAGT
GTGACCAGGGATGGTATGGGGATGCTTGCCAGTACCCAACTAACTGTGACTTGACAAAGAAGAAAAGTAA
CCAAATGTGCAAGAATTCACAAGACATCATCTGCTCTAATGCAGGTACATGTCACTGTGGCAGGTGTAAG
TGTGATAATTCAGATGGAAGTGGACTTGTGTATGGTAAATTTTGTGAGTGTGACGATAGAGAATGCATAG
ACGATGAAACAGAAGAAATATGTGGAGGCCATGGGAAGTGTTACTGTGGAAACTGCTACTGCAAGGCTGG
TTGGCATGGAGATAAATGTGAATTCCAGTGCGATATCACCCCCTGGGAAAGCAAGCGAAGATGCACGTCT
CCAGATGGCAAAATCTGCAGTAACAGAGGGACTTGTGTATGTGGTGAATGTACCTGTCACGATGTTGATC
CGACTGGGGACTGGGGAGATATTCATGGGGACACCTGTGAATGTGATGAGAGGGACTGTAGAGCTGTCTA
TGACCGATATTCTGATGACTTCTGTTCAGGTCATGGACAGTGTAATTGCGGAAGATGTGACTGCAAAGCA
GGCTGGTATGGGAAGAAGTGTGAGCACCCACAGTCCTGCACGCTGTCAGCTGAGGAGAGCATCAGGAAGT
GCCAGGGAAGCTCGGATCTGCCTTGCTCTGGGAGGGGTAAATGTGAATGTGGCAAATGCACCTGCTATCC
TCCAGGAGATCGCCGGGTGTATGGCAAGACTTGTGAGTGTGATGATCGCCGCTGTGAAGACCTCGATGGT
GTGGTCTGTGGAGGCCACGGCACATGTTCCTGTGGTCGCTGTGTTTGTGAGAGAGGATGGTTTGGAAAGC
TCTGCCAACATCCGCGGAAGTGTAACATGACGGAAGAACAAAGCAAGAATCTGTGTGAATCAGCAGATGG
CATATTGTGCTCGGGGAAGGGTTCTTGTCATTGTGGGAAGTGCATTTGTTCTGCTGAAGAGTGGTATATT
TCTGGGGAGTTCTGTGACTGTGATGACAGAGACTGCGACAAACATGATGGTCTCATTTGTACAGGGAATG
GAATATGTAGCTGTGGAAACTGTGAATGCTGGGATGGATGGAATGGAAATGCATGTGAAATCTGGCTTGG
CTCAGAATATCCTTAA

Translation (401 aa):
MNLVAVMGAFNKGHGKCDCGKCKCDQGWYGDACQYPTNCDLTKKKSNQMCKNSQDIICSNAGTCHCGRCK
CDNSDGSGLVYGKFCECDDRECIDDETEEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRCTS
PDGKICSNRGTCVCGECTCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCDCKA
GWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPPGDRRVYGKTCECDDRRCEDLDG
VVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNLCESADGILCSGKGSCHCGKCICSAEEWYI
SGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGWNGNACEIWLGSEYP


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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