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Report for CCDS71001.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71001.1 Public Mus musculus 2 C8g 23 108 98 CCDS HistoryNCBI Gene:69379Re-query CCDS DB by CCDS ID:71001.1Re-query CCDS DB by GeneID:69379See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71001.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015227.3 ENSMUSP00000015227.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015227.3Link to Ensembl Protein Viewer:ENSMUSP00000015227.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000015227Re-query CCDS DB by Protein ID:ENSMUSP00000015227
Original member Current member NCBI NM_001271777.1 NP_001258706.1 Accepted alive Link to Nucleotide Sequence:NM_001271777.1Link to Protein Sequence:NP_001258706.1Re-query CCDS DB by Nucleotide ID:NM_001271777Re-query CCDS DB by Protein ID:NP_001258706Link to BLAST:NP_001258706.1

Chromosomal Locations for CCDS 71001.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25498810 25498823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25498905 25498943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25499014 25499115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25499398 25499505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25499589 25499659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25499839 25499975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25501528 25501563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (507 nt):
ATGCCTTCCCCAATGCTACAGGGCACAGGGAGGCAGTTTGCAGGGACATGGCTCCTGGTGGCTGTGGGCT
CTTCGTGCCGCTTTCTTCAGGAGCAGGGACACCGAGCTGAGGCCACCACATTGCACGCAGCTCCCCAGGG
TGCAGCTATGGCTGTCAGCACCTTCCGAAAGCTAGATGGGATATGTTGGCAGGTACGCCAACTCTTTGAG
AACACAGGGGTCCCTGGCCGCTTCTTGTTCCAAGTCTCACGGGCCCGTGGACCAGTGCATATGGTGGTTG
CTGAGACTGACTATCAGAGCTTTGCCATCCTGTACCTGGAACAGGGAAGGAAGCTGTCTGTGAAACTATA
CGTCCGCTCACTGCCAGTGAATGACTCTGTCCTGGATGTGTTTGAGCGGCGAGTCAGGGAAGCCAACCTG
ACAGAAGATCAGATTCTTTTCTTTCCCAAGTATGGTTTCTGCGAGACTGCGGACCAATTACACATCCTGA
ACGAGGTGCCGCGATAA

Translation (168 aa):
MPSPMLQGTGRQFAGTWLLVAVGSSCRFLQEQGHRAEATTLHAAPQGAAMAVSTFRKLDGICWQVRQLFE
NTGVPGRFLFQVSRARGPVHMVVAETDYQSFAILYLEQGRKLSVKLYVRSLPVNDSVLDVFERRVREANL
TEDQILFFPKYGFCETADQLHILNEVPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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