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Report for CCDS4918.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4918.1 Public Homo sapiens 6 MEP1A 24 110 108 CCDS HistoryNCBI Gene:4224Re-query CCDS DB by CCDS ID:4918.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4918.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000230588.9 ENSP00000230588.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000230588.9Link to Ensembl Protein Viewer:ENSP00000230588.4Re-query CCDS DB by Nucleotide ID:ENST00000230588Re-query CCDS DB by Protein ID:ENSP00000230588
Original member Current member NCBI NM_005588.3 NP_005579.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005588.3Link to Protein Sequence:NP_005579.2Re-query CCDS DB by Nucleotide ID:NM_005588Re-query CCDS DB by Protein ID:NP_005579Link to BLAST:NP_005579.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005579.2 746 Q16819 746 100% 0 0

Chromosomal Locations for CCDS 4918.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 46793399 46793467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46793552 46793576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46793666 46793716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46798606 46798646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46799106 46799181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46809420 46809537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46819529 46819704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46825272 46825493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46826354 46826503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46829356 46829571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46833074 46833538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46834578 46834751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46835249 46835549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46838980 46839136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2241 nt):
ATGGCTTGGATTAGATCCACTTGCATTCTCTTTTTTACCTTGCTTTTTGCCCACATAGCAGCTGTACCGA
TTAAGTATCTTCCTGAAGAAAATGTACATGATGCAGATTTTGGTGAACAGAAGGATATTTCAGAAATCAA
TTTAGCTGCAGGCTTGGACCTCTTTCAAGGGGACATCCTCTTGCAGAAATCCAGAAATGGCCTGAGAGAC
CCAAACACCAGGTGGACGTTCCCCATTCCTTACATCTTGGCTGATAATTTGGGGCTGAATGCTAAAGGAG
CCATTCTGTATGCCTTTGAGATGTTCCGTCTCAAGTCCTGTGTGGATTTCAAGCCCTATGAAGGAGAGAG
CTCATATATCATATTTCAACAGTTTGATGGGTGCTGGTCTGAGGTTGGTGACCAACATGTGGGACAGAAC
ATTTCCATTGGCCAAGGATGTGCCTATAAGGCCATCATAGAACACGAGATCCTGCATGCTTTGGGATTTT
ACCACGAGCAGTCAAGGACGGACCGGGATGATTATGTGAACATCTGGTGGGACCAAATTCTTTCAGGTTA
CCAGCACAACTTTGACACCTATGATGATAGCTTAATCACAGACCTCAATACACCCTATGATTATGAGTCT
TTGATGCACTACCAGCCTTTCTCATTTAACAAGAATGCAAGTGTTCCCACCATCACAGCCAAGATCCCTG
AGTTTAACTCCATTATCGGACAGCGCCTGGATTTCAGTGCCATTGATTTAGAGAGGCTGAACCGAATGTA
CAATTGCACCACAACTCACACTCTTTTGGACCACTGTACTTTTGAGAAGGCAAACATCTGTGGAATGATT
CAGGGCACCAGAGATGACACTGACTGGGCCCATCAGGACAGTGCTCAGGCTGGAGAAGTGGATCACACCT
TGTTGGGACAATGCACAGGTGCCGGCTACTTCATGCAGTTCAGCACCAGCTCGGGGTCCGCGGAAGAGGC
AGCCCTACTGGAGTCTCGGATTCTTTACCCAAAGAGGAAGCAGCAGTGCCTGCAATTTTTCTATAAAATG
ACGGGAAGTCCTTCAGACAGACTCGTTGTCTGGGTCAGGAGGGATGACAGCACAGGCAATGTTCGCAAGT
TGGTGAAGGTGCAGACTTTTCAAGGAGATGATGACCACAATTGGAAAATTGCCCATGTGGTGCTCAAAGA
GGAACAGAAGTTTCGCTACCTTTTCCAGGGCACAAAAGGCGACCCTCAGAACTCAACTGGGGGAATTTAC
CTAGATGACATCACTCTGACAGAAACCCCCTGCCCCACAGGGGTCTGGACAGTCCGGAATTTCTCCCAAG
TCCTTGAGAACACCAGCAAAGGGGACAAGCTTCAGAGCCCTCGATTCTACAATTCGGAGGGATATGGTTT
TGGGGTAACTTTATACCCAAATAGCAGAGAAAGCTCTGGTTACTTGAGACTTGCTTTTCATGTGTGCAGT
GGGGAGAACGATGCTATCCTGGAGTGGCCGGTAGAAAACAGACAGGTGATAATTACCATCCTTGACCAGG
AGCCTGATGTCCGGAACAGGATGTCCTCAAGCATGGTGTTCACTACCTCGAAGTCGCACACATCTCCAGC
GATAAATGACACTGTCATCTGGGACAGGCCGTCCAGGGTGGGAACCTATCATACGGACTGTAATTGTTTT
AGAAGCATCGACTTGGGCTGGAGTGGTTTCATTTCCCACCAAATGCTGAAAAGGAGGAGTTTCCTGAAAA
ATGATGACCTCATCATATTTGTGGACTTTGAAGATATCACCCACCTCAGCCAGACTGAAGTTCCCACTAA
AGGCAAAAGACTGAGCCCCCAAGGCCTCATTCTCCAAGGCCAGGAGCAGCAGGTCTCCGAAGAAGGTTCG
GGAAAGGCCATGTTAGAGGAAGCCCTACCTGTCAGCCTGAGCCAGGGGCAGCCCAGCCGACAGAAGCGGT
CGGTGGAGAACACAGGCCCCCTGGAGGACCATAACTGGCCACAGTACTTCAGAGACCCATGTGACCCAAA
CCCTTGCCAAAATGACGGCATCTGTGTGAACGTGAAGGGGATGGCGAGCTGCAGGTGCATCTCTGGACAT
GCTTTCTTCTACACGGGGGAGCGCTGTCAGGCCGTGCAGGTGCACGGCAGTGTCCTGGGCATGGTGATCG
GAGGCACGGCTGGCGTGATCTTCTTGACCTTCTCCATCATCGCCATCCTTTCCCAAAGGCCAAGGAAGTG
A

Translation (746 aa):
MAWIRSTCILFFTLLFAHIAAVPIKYLPEENVHDADFGEQKDISEINLAAGLDLFQGDILLQKSRNGLRD
PNTRWTFPIPYILADNLGLNAKGAILYAFEMFRLKSCVDFKPYEGESSYIIFQQFDGCWSEVGDQHVGQN
ISIGQGCAYKAIIEHEILHALGFYHEQSRTDRDDYVNIWWDQILSGYQHNFDTYDDSLITDLNTPYDYES
LMHYQPFSFNKNASVPTITAKIPEFNSIIGQRLDFSAIDLERLNRMYNCTTTHTLLDHCTFEKANICGMI
QGTRDDTDWAHQDSAQAGEVDHTLLGQCTGAGYFMQFSTSSGSAEEAALLESRILYPKRKQQCLQFFYKM
TGSPSDRLVVWVRRDDSTGNVRKLVKVQTFQGDDDHNWKIAHVVLKEEQKFRYLFQGTKGDPQNSTGGIY
LDDITLTETPCPTGVWTVRNFSQVLENTSKGDKLQSPRFYNSEGYGFGVTLYPNSRESSGYLRLAFHVCS
GENDAILEWPVENRQVIITILDQEPDVRNRMSSSMVFTTSKSHTSPAINDTVIWDRPSRVGTYHTDCNCF
RSIDLGWSGFISHQMLKRRSFLKNDDLIIFVDFEDITHLSQTEVPTKGKRLSPQGLILQGQEQQVSEEGS
GKAMLEEALPVSLSQGQPSRQKRSVENTGPLEDHNWPQYFRDPCDPNPCQNDGICVNVKGMASCRCISGH
AFFYTGERCQAVQVHGSVLGMVIGGTAGVIFLTFSIIAILSQRPRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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