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Report for CCDS1448.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1448.1 Public Homo sapiens 1 LRRN2 24 110 108 CCDS HistoryNCBI Gene:10446Re-query CCDS DB by CCDS ID:1448.1Re-query CCDS DB by GeneID:10446See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1448.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367175.1 ENSP00000356143.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367175.1Link to Ensembl Protein Viewer:ENSP00000356143.1Re-query CCDS DB by Nucleotide ID:ENST00000367175Re-query CCDS DB by Protein ID:ENSP00000356143
Original member Current member EBI ENST00000367176.7 ENSP00000356144.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367176.7Link to Ensembl Protein Viewer:ENSP00000356144.3Re-query CCDS DB by Nucleotide ID:ENST00000367176Re-query CCDS DB by Protein ID:ENSP00000356144
Original member Current member EBI ENST00000367177.4 ENSP00000356145.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367177.4Link to Ensembl Protein Viewer:ENSP00000356145.3Re-query CCDS DB by Nucleotide ID:ENST00000367177Re-query CCDS DB by Protein ID:ENSP00000356145
Original member Current member NCBI NM_006338.3 NP_006329.2 Accepted alive Link to Nucleotide Sequence:NM_006338.3Link to Protein Sequence:NP_006329.2Re-query CCDS DB by Nucleotide ID:NM_006338Re-query CCDS DB by Protein ID:NP_006329Link to BLAST:NP_006329.2
Original member Current member NCBI NM_201630.2 NP_963924.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_201630.2Link to Protein Sequence:NP_963924.1Re-query CCDS DB by Nucleotide ID:NM_201630Re-query CCDS DB by Protein ID:NP_963924Link to BLAST:NP_963924.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006329.2 713 O75325 713 100% 0 0
NP_963924.1 713 O75325 713 100% 0 0

Chromosomal Locations for CCDS 1448.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 204617851 204619992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2142 nt):
ATGAGGCTTCTCGTGGCCCCACTCTTGCTAGCTTGGGTGGCTGGTGCCACTGCCGCTGTGCCCGTGGTAC
CCTGGCATGTTCCCTGCCCCCCTCAGTGTGCCTGCCAGATCCGGCCCTGGTATACGCCCCGCTCGTCCTA
CCGCGAGGCTACCACTGTGGACTGCAATGACCTATTCCTGACGGCAGTCCCCCCGGCACTCCCCGCAGGC
ACACAGACCCTGCTCCTGCAGAGCAACAGCATTGTCCGTGTGGACCAGAGTGAGCTGGGCTACCTGGCCA
ATCTCACAGAGCTGGACCTGTCCCAGAACAGCTTTTCGGATGCCCGAGACTGTGATTTCCATGCCCTGCC
CCAGCTGCTGAGCCTGCACCTAGAGGAGAACCAGCTGACCCGGCTGGAGGACCACAGCTTTGCAGGGCTG
GCCAGCCTACAGGAACTCTATCTCAACCACAACCAGCTCTACCGCATCGCCCCCAGGGCCTTTTCTGGCC
TCAGCAACTTGCTGCGGCTGCACCTCAACTCCAACCTCCTGAGGGCCATTGACAGCCGCTGGTTTGAAAT
GCTGCCCAACTTGGAGATACTCATGATTGGCGGCAACAAGGTAGATGCCATCCTGGACATGAACTTCCGG
CCCCTGGCCAACCTGCGTAGCCTGGTGCTAGCAGGCATGAACCTGCGGGAGATCTCCGACTATGCCCTGG
AGGGGCTGCAAAGCCTGGAGAGCCTCTCCTTCTATGACAACCAGCTGGCCCGGGTGCCCAGGCGGGCACT
GGAACAGGTGCCCGGGCTCAAGTTCCTAGACCTCAACAAGAACCCGCTCCAGCGGGTAGGGCCGGGGGAC
TTTGCCAACATGCTGCACCTTAAGGAGCTGGGACTGAACAACATGGAGGAGCTGGTCTCCATCGACAAGT
TTGCCCTGGTGAACCTCCCCGAGCTGACCAAGCTGGACATCACCAATAACCCACGGCTGTCCTTCATCCA
CCCCCGCGCCTTCCACCACCTGCCCCAGATGGAGACCCTCATGCTCAACAACAACGCTCTCAGTGCCTTG
CACCAGCAGACGGTGGAGTCCCTGCCCAACCTGCAGGAGGTAGGTCTCCACGGCAACCCCATCCGCTGTG
ACTGTGTCATCCGCTGGGCCAATGCCACGGGCACCCGTGTCCGCTTCATCGAGCCGCAATCCACCCTGTG
TGCGGAGCCTCCGGACCTCCAGCGCCTCCCGGTCCGTGAGGTGCCCTTCCGGGAGATGACGGACCACTGT
TTGCCCCTCATCTCCCCACGAAGCTTCCCCCCAAGCCTCCAGGTAGCCAGTGGAGAGAGCATGGTGCTGC
ATTGCCGGGCACTGGCCGAACCCGAACCCGAGATCTACTGGGTCACTCCAGCTGGGCTTCGACTGACACC
TGCCCATGCAGGCAGGAGGTACCGGGTGTACCCCGAGGGGACCCTGGAGCTGCGGAGGGTGACAGCAGAA
GAGGCAGGGCTATACACCTGTGTGGCCCAGAACCTGGTGGGGGCTGACACTAAGACGGTTAGTGTGGTTG
TGGGCCGTGCTCTCCTCCAGCCAGGCAGGGACGAAGGACAGGGGCTGGAGCTCCGGGTGCAGGAGACCCA
CCCCTATCACATCCTGCTATCTTGGGTCACCCCACCCAACACAGTGTCCACCAACCTCACCTGGTCCAGT
GCCTCCTCCCTCCGGGGCCAGGGGGCCACAGCTCTGGCCCGCCTGCCTCGGGGAACCCACAGCTACAACA
TTACCCGCCTCCTTCAGGCCACGGAGTACTGGGCCTGCCTGCAAGTGGCCTTTGCTGATGCCCACACCCA
GTTGGCTTGTGTATGGGCCAGGACCAAAGAGGCCACTTCTTGCCACAGAGCCTTAGGGGACCGTCCTGGG
CTCATTGCCATCCTGGCTCTCGCTGTCCTTCTCCTGGCAGCTGGGCTAGCGGCCCACCTTGGCACAGGCC
AACCCAGGAAGGGTGTGGGTGGGAGGCGGCCTCTCCCTCCAGCCTGGGCTTTCTGGGGCTGGAGTGCCCC
TTCTGTCCGGGTTGTGTCTGCTCCCCTCGTCCTGCCCTGGAATCCAGGGAGGAAGCTGCCCAGATCCTCA
GAAGGGGAGACACTGTTGCCACCATTGTCTCAAAATTCTTGA

Translation (713 aa):
MRLLVAPLLLAWVAGATAAVPVVPWHVPCPPQCACQIRPWYTPRSSYREATTVDCNDLFLTAVPPALPAG
TQTLLLQSNSIVRVDQSELGYLANLTELDLSQNSFSDARDCDFHALPQLLSLHLEENQLTRLEDHSFAGL
ASLQELYLNHNQLYRIAPRAFSGLSNLLRLHLNSNLLRAIDSRWFEMLPNLEILMIGGNKVDAILDMNFR
PLANLRSLVLAGMNLREISDYALEGLQSLESLSFYDNQLARVPRRALEQVPGLKFLDLNKNPLQRVGPGD
FANMLHLKELGLNNMEELVSIDKFALVNLPELTKLDITNNPRLSFIHPRAFHHLPQMETLMLNNNALSAL
HQQTVESLPNLQEVGLHGNPIRCDCVIRWANATGTRVRFIEPQSTLCAEPPDLQRLPVREVPFREMTDHC
LPLISPRSFPPSLQVASGESMVLHCRALAEPEPEIYWVTPAGLRLTPAHAGRRYRVYPEGTLELRRVTAE
EAGLYTCVAQNLVGADTKTVSVVVGRALLQPGRDEGQGLELRVQETHPYHILLSWVTPPNTVSTNLTWSS
ASSLRGQGATALARLPRGTHSYNITRLLQATEYWACLQVAFADAHTQLACVWARTKEATSCHRALGDRPG
LIAILALAVLLLAAGLAAHLGTGQPRKGVGGRRPLPPAWAFWGWSAPSVRVVSAPLVLPWNPGRKLPRSS
EGETLLPPLSQNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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