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Report for CCDS4038.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4038.1 Public Homo sapiens 5 WDR41 24 110 108 CCDS HistoryNCBI Gene:55255Re-query CCDS DB by CCDS ID:4038.1Re-query CCDS DB by GeneID:55255See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4038.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296679.9 ENSP00000296679.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296679.9Link to Ensembl Protein Viewer:ENSP00000296679.4Re-query CCDS DB by Nucleotide ID:ENST00000296679Re-query CCDS DB by Protein ID:ENSP00000296679
Original member Current member NCBI NM_018268.4 NP_060738.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018268.4Link to Protein Sequence:NP_060738.2Re-query CCDS DB by Nucleotide ID:NM_018268Re-query CCDS DB by Protein ID:NP_060738Link to BLAST:NP_060738.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060738.2 459 Q9HAD4-1 459 100% 0 0

Chromosomal Locations for CCDS 4038.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 77433135 77433287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77436261 77436394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77437336 77437424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77438240 77438361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77440813 77440997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77449760 77449870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77451291 77451353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77453817 77453928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77459062 77459124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77463095 77463226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77464761 77464809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77489457 77489572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77492170 77492220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGTTGCGATGGCTGATCGGGGGAGGCCGAGAACCGCAGGGACTGGCCGAGAAATCTCCTTTACAGACAA
TAGGTGAAGAACAAACCCAGAATCCCTACACTGAACTGCTAGTACTGAAGGCTCATCATGATATTGTACG
ATTTCTGGTACAGTTAGATGACTACAGATTTGCATCTGCTGGTGATGATGGAATTGTAGTTGTGTGGAAT
GCCCAGACAGGGGAAAAACTTTTAGAACTGAATGGACACACTCAAAAGATAACAGCTATTATTACATTTC
CTTCCTTGGAATCTTGTGAAGAGAAAAATCAACTCATCTTGACAGCCTCTGCTGATAGAACAGTTATTGT
GTGGGATGGTGATACTACCAGACAAGTTCAGAGAATATCATGCTTCCAGTCTACTGTAAAGTGTTTAACT
GTTCTTCAGAGACTAGATGTTTGGCTTTCTGGTGGGAATGACCTGTGTGTGTGGAACCGAAAATTAGATC
TCCTGTGTAAGACTAGCCACCTTTCTGATACAGGTATTAGTGCTTTGGTTGAAATACCTAAGAACTGTGT
TGTGGCAGCAGTTGGCAAAGAACTGATAATTTTCAGGTTGGTAGCACCCACAGAAGGATCACTAGAATGG
GATATTCTTGAAGTTAAGCGCCTCCTTGATCACCAGGATAATATTCTCTCATTGATTAATGTCAATGATT
TGAGTTTTGTCACCGGCTCCCACGTCGGAGAGCTGATCATCTGGGATGCCCTGGACTGGACCATGCAGGC
CTATGAACGCAACTTCTGGGACCCATCTCCACAACTGGACACCCAACAAGAAATAAAACTCTGTCAAAAA
TCAAATGACATTTCTATTCATCATTTCACATGTGATGAAGAGAATGTATTTGCTGCAGTTGGAAGGGGTT
TATACGTGTATAGCCTTCAAATGAAGCGTGTGATTGCCTGCCAGAAAACTGCACATGACTCCAATGTCCT
GCACGTTGCCAGACTTCCAAACAGGCAGTTAATCTCATGCTCAGAAGATGGCAGTGTACGCATTTGGGAG
TTAAGAGAAAAACAGCAGCTTGCAGCTGAGCCTGTACCAACAGGTTTTTTTAACATGTGGGGATTTGGAA
GAGTCAGCAAACAAGCCAGCCAACCTGTTAAAAAGCAGCAAGAAAATGCTACTTCATGTTCACTGGAGCT
TATTGGAGATTTGATTGGACACTCATCATCTGTGGAGATGTTTCTATACTTTGAAGATCATGGACTAGTG
ACGTGCTCCGCTGATCATCTCATTATTTTGTGGAAAAATGGAGAGCGAGAATCTGGATTGCGCAGTTTAA
GATTATTTCAAAAATTAGAGGAGAATGGTGACTTATACCTTGCTGTCTAG

Translation (459 aa):
MLRWLIGGGREPQGLAEKSPLQTIGEEQTQNPYTELLVLKAHHDIVRFLVQLDDYRFASAGDDGIVVVWN
AQTGEKLLELNGHTQKITAIITFPSLESCEEKNQLILTASADRTVIVWDGDTTRQVQRISCFQSTVKCLT
VLQRLDVWLSGGNDLCVWNRKLDLLCKTSHLSDTGISALVEIPKNCVVAAVGKELIIFRLVAPTEGSLEW
DILEVKRLLDHQDNILSLINVNDLSFVTGSHVGELIIWDALDWTMQAYERNFWDPSPQLDTQQEIKLCQK
SNDISIHHFTCDEENVFAAVGRGLYVYSLQMKRVIACQKTAHDSNVLHVARLPNRQLISCSEDGSVRIWE
LREKQQLAAEPVPTGFFNMWGFGRVSKQASQPVKKQQENATSCSLELIGDLIGHSSSVEMFLYFEDHGLV
TCSADHLIILWKNGERESGLRSLRLFQKLEENGDLYLAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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