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Report for CCDS2544.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2544.1 Public Homo sapiens 2 MTERF4 24 110 108 CCDS HistoryNCBI Gene:130916Re-query CCDS DB by CCDS ID:2544.1Re-query CCDS DB by GeneID:130916See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2544.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000241527.10 ENSP00000241527.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000241527.10Link to Ensembl Protein Viewer:ENSP00000241527.6Re-query CCDS DB by Nucleotide ID:ENST00000241527Re-query CCDS DB by Protein ID:ENSP00000241527
Original member Current member EBI ENST00000391980.7 ENSP00000375840.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000391980.7Link to Ensembl Protein Viewer:ENSP00000375840.2Re-query CCDS DB by Nucleotide ID:ENST00000391980Re-query CCDS DB by Protein ID:ENSP00000375840
Original member Current member EBI ENST00000614476.4 ENSP00000480378.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000614476.4Link to Ensembl Protein Viewer:ENSP00000480378.1Re-query CCDS DB by Nucleotide ID:ENST00000614476Re-query CCDS DB by Protein ID:ENSP00000480378
Original member Current member NCBI NM_182501.4 NP_872307.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182501.4Link to Protein Sequence:NP_872307.2Re-query CCDS DB by Nucleotide ID:NM_182501Re-query CCDS DB by Protein ID:NP_872307Link to BLAST:NP_872307.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_872307.2 381 Q7Z6M4 381 100% 0 0

Chromosomal Locations for CCDS 2544.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 241095998 241096438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241097243 241097427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241099396 241099894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241102253 241102273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGGCTGCGTTCGGCCGTCAGGTCCTTGATTGGCACCGCCTGATCCCCCTCACCTGGGCCTGTATGGCTA
GGCAGACTCCTCATCTTGGAGAACAGAGAAGGACGACAGCTTCTTTGTTGCGCAAACTGACTACAGCCTC
CAATGGAGGGGTCATTGAGGAGTTATCTTGTGTTAGATCCAATAACTATGTGCAGGAACCAGAGTGCAGG
AGGAATCTTGTTCAGTGCCTCCTTGAGAAGCAGGGGACTCCTGTGGTACAAGGGTCCTTGGAGCTAGAGA
GGGTCATGAGTTCCCTCCTGGACATGGGTTTCAGCAATGCCCATATTAATGAATTGCTCAGTGTACGGCG
AGGTGCCAGTCTTCAACAGTTGCTGGACATCATTTCAGAATTTATTCTCTTGGGTCTGAATCCAGAGCCT
GTGTGTGTGGTCTTGAAGAAAAGTCCCCAGTTATTGAAACTGCCTATTATGCAAATGAGGAAGCGCTCCA
GTTACCTGCAAAAGCTTGGGCTTGGAGAAGGGAAATTAAAGAGGGTGCTTTACTGTTGCCCTGAAATTTT
CACCATGCGCCAGCAGGACATTAACGACACTGTCAGGCTTCTCAAGGAGAAGTGCCTTTTCACGGTACAG
CAAGTCACCAAGATTTTGCACAGTTGCCCCTCTGTTCTTCGAGAGGACCTGGGTCAACTGGAATACAAGT
TTCAGTATGCATACTTCAGGATGGGAATTAAGCATCCAGACATTGTAAAGAGTGAGTACTTGCAGTATTC
ACTAACCAAGATTAAGCAGAGACACATTTACCTGGAGCGCCTGGGACGGTACCAAACCCCTGATAAGAAG
GGGCAGACACAGATCCCTAACCCATTGCTCAAGGACATTCTCAGAGTTTCAGAAGCTGAGTTTTTGGCCA
GGACAGCCTGTACTTCTGTTGAGGAGTTTCAAGTTTTTAAGAAGCTCCTGGCTCGGGAGGAGGAGGAGTC
TGAGAGCAGCACATCTGATGACAAAAGGGCAAGTCTGGATGAGGATGAGGATGACGATGATGAGGAGGAC
AATGATGAGGATGACAATGATGAGGATGACGATGATGAGGACGACGACGAGGCGGAGGACAATGATGAGG
ATGAGGACGACGACGAGGAGGAATAG

Translation (381 aa):
MAAFGRQVLDWHRLIPLTWACMARQTPHLGEQRRTTASLLRKLTTASNGGVIEELSCVRSNNYVQEPECR
RNLVQCLLEKQGTPVVQGSLELERVMSSLLDMGFSNAHINELLSVRRGASLQQLLDIISEFILLGLNPEP
VCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEKCLFTVQ
QVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVKSEYLQYSLTKIKQRHIYLERLGRYQTPDKK
GQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKKLLAREEEESESSTSDDKRASLDEDEDDDDEED
NDEDDNDEDDDDEDDDEAEDNDEDEDDDEEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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