NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1177.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1177.1 Public Homo sapiens 1 MNDA 24 110 108 CCDS HistoryNCBI Gene:4332Re-query CCDS DB by CCDS ID:1177.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1177.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368141.5 ENSP00000357123.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368141.5Link to Ensembl Protein Viewer:ENSP00000357123.4Re-query CCDS DB by Nucleotide ID:ENST00000368141Re-query CCDS DB by Protein ID:ENSP00000357123
Original member Current member NCBI NM_002432.3 NP_002423.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002432.3Link to Protein Sequence:NP_002423.1Re-query CCDS DB by Nucleotide ID:NM_002432Re-query CCDS DB by Protein ID:NP_002423Link to BLAST:NP_002423.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002423.1 407 P41218 407 100% 0 0

Chromosomal Locations for CCDS 1177.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 158842154 158842418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158843279 158843415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158843955 158844122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158845587 158846003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158847728 158847916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158849190 158849237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1224 nt):
ATGGTGAATGAATACAAGAAAATTCTTTTGCTGAAAGGATTTGAGCTCATGGATGATTATCATTTTACAT
CAATTAAGTCCTTACTGGCCTATGATTTAGGACTAACTACAAAAATGCAAGAGGAATACAACAGAATTAA
GATTACAGATTTGATGGAAAAAAAGTTCCAAGGCGTTGCCTGTCTAGACAAACTAATAGAACTTGCCAAA
GATATGCCATCACTTAAAAACCTTGTTAACAATCTTCGAAAAGAGAAGTCAAAAGTTGCTAAGAAAATTA
AAACACAAGAAAAAGCTCCAGTGAAAAAAATAAACCAGGAAGAAGTGGGTCTTGCGGCACCTGCACCCAC
CGCAAGAAACAAACTGACATCGGAAGCAAGAGGGAGGATTCCTGTAGCTCAGAAAAGAAAAACTCCAAAC
AAAGAAAAGACTGAAGCCAAAAGGAATAAGGTGTCCCAAGAGCAGAGTAAGCCCCCAGGTCCCTCAGGAG
CCAGCACATCTGCAGCTGTGGATCATCCCCCACTACCCCAGACCTCATCATCAACTCCATCCAACACTTC
GTTTACTCCGAATCAGGAAACCCAGGCCCAACGGCAGGTGGATGCAAGAAGAAATGTTCCCCAAAACGAC
CCAGTGACAGTGGTGGTACTGAAAGCAACAGCGCCATTTAAATACGAGTCCCCAGAAAATGGGAAAAGCA
CAATGTTTCATGCTACAGTGGCCAGTAAGACTCAATATTTCCATGTGAAAGTCTTCGACATCAACTTGAA
AGAGAAATTTGTAAGGAAGAAGGTCATTACCATATCTGATTACTCTGAATGTAAAGGAGTAATGGAAATA
AAGGAAGCATCATCTGTGTCTGACTTTAATCAAAATTTTGAGGTCCCAAACAGAATTATCGAAATAGCAA
ATAAAACTCCCAAGATCAGTCAACTTTACAAGCAAGCATCTGGAACAATGGTGTATGGGTTGTTTATGTT
ACAAAAGAAAAGCGTACACAAGAAGAACACAATTTATGAAATACAGGATAATACAGGATCCATGGATGTA
GTGGGGAGTGGAAAATGGCACAATATCAAGTGTGAGAAAGGAGATAAACTTCGACTCTTCTGCCTTCAAC
TGAGAACAGTTGACCGCAAGCTGAAACTGGTGTGTGGAAGTCACAGCTTCATCAAGGTCATCAAGGCCAA
GAAAAACAAGGAAGGACCAATGAATGTTAATTGA

Translation (407 aa):
MVNEYKKILLLKGFELMDDYHFTSIKSLLAYDLGLTTKMQEEYNRIKITDLMEKKFQGVACLDKLIELAK
DMPSLKNLVNNLRKEKSKVAKKIKTQEKAPVKKINQEEVGLAAPAPTARNKLTSEARGRIPVAQKRKTPN
KEKTEAKRNKVSQEQSKPPGPSGASTSAAVDHPPLPQTSSSTPSNTSFTPNQETQAQRQVDARRNVPQND
PVTVVVLKATAPFKYESPENGKSTMFHATVASKTQYFHVKVFDINLKEKFVRKKVITISDYSECKGVMEI
KEASSVSDFNQNFEVPNRIIEIANKTPKISQLYKQASGTMVYGLFMLQKKSVHKKNTIYEIQDNTGSMDV
VGSGKWHNIKCEKGDKLRLFCLQLRTVDRKLKLVCGSHSFIKVIKAKKNKEGPMNVN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH