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Report for CCDS30930.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30930.1 Public Homo sapiens 1 LRRC52 24 110 108 CCDS HistoryNCBI Gene:440699Re-query CCDS DB by CCDS ID:30930.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30930.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000294818.2 ENSP00000294818.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000294818.2Link to Ensembl Protein Viewer:ENSP00000294818.2Re-query CCDS DB by Nucleotide ID:ENST00000294818Re-query CCDS DB by Protein ID:ENSP00000294818
Original member Current member NCBI NM_001005214.4 NP_001005214.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001005214.4Link to Protein Sequence:NP_001005214.2Re-query CCDS DB by Nucleotide ID:NM_001005214Re-query CCDS DB by Protein ID:NP_001005214Link to BLAST:NP_001005214.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005214.2 313 Q8N7C0 313 100% 0 0

Chromosomal Locations for CCDS 30930.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 165544297 165544918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165563505 165563824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGTCCCTTGCTTCAGGCCCTGGCCCTGGGTGGTTACTCTTTTCCTTTGGAATGGGGCTGGTATCAGGGT
CAAAGTGTCCAAATAATTGTCTGTGTCAAGCCCAAGAAGTAATCTGCACAGGGAAGCAGTTAACCGAATA
CCCCCTTGACATACCCCTGAACACCCGGAGGCTGTTCCTGAACGAGAACAGAATCACTAGTTTGCCAGCA
ATGCATCTAGGACTCCTCAGTGACCTTGTTTATTTGGACTGTCAGAACAACCGGATTCGAGAGGTGATGG
ATTATACCTTCATCGGGGTCTTCAAACTCATCTACCTTGACCTCAGCTCCAACAACCTAACCTCGATCTC
CCCATTCACTTTCTCGGTGCTCAGCAACCTGGTGCAGCTGAACATTGCCAACAACCCTCACCTGTTATCG
CTTCACAAGTTCACCTTTGCCAACACCACCTCTTTGAGGTACCTGGACCTCAGAAATACCGGCTTGCAGA
CCCTGGACAGTGCTGCCTTATACCACCTCACTACTCTGGAGACCCTGTTTCTGAGTGGAAACCCCTGGAA
GTGCAACTGCTCTTTCCTGGACTTCGCCATCTTCTTAATAGTGTTCCATATGGACCCCTCAGATGATCTA
AATGCCACATGTGTGGAGCCCACAGAGCTGACAGGGTGGCCCATCACCCGGGTGGGGAACCCACTCCGAT
ACATGTGCATCACGCACCTGGACCACAAAGACTACATCTTCCTGCTGCTCATCGGCTTCTGCATCTTCGC
CGCGGGAACTGTGGCTGCCTGGCTCACAGGTGTGTGTGCTGTGCTCTACCAGAACACCCGCCACAAGTCG
AGTGAAGAAGATGAGGACGAGGCCGGGACTAGGGTGGAAGTCAGCCGGCGGATTTTTCAAACCCAGACGA
GCTCGGTCCAGGAGTTCCCTCAGCTTATTTAG

Translation (313 aa):
MSLASGPGPGWLLFSFGMGLVSGSKCPNNCLCQAQEVICTGKQLTEYPLDIPLNTRRLFLNENRITSLPA
MHLGLLSDLVYLDCQNNRIREVMDYTFIGVFKLIYLDLSSNNLTSISPFTFSVLSNLVQLNIANNPHLLS
LHKFTFANTTSLRYLDLRNTGLQTLDSAALYHLTTLETLFLSGNPWKCNCSFLDFAIFLIVFHMDPSDDL
NATCVEPTELTGWPITRVGNPLRYMCITHLDHKDYIFLLLIGFCIFAAGTVAAWLTGVCAVLYQNTRHKS
SEEDEDEAGTRVEVSRRIFQTQTSSVQEFPQLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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