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Report for CCDS47087.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47087.1 Public Homo sapiens 4 TMEM150C 24 110 108 CCDS HistoryNCBI Gene:441027Re-query CCDS DB by CCDS ID:47087.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47087.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000449862.7 ENSP00000403438.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000449862.7Link to Ensembl Protein Viewer:ENSP00000403438.2Re-query CCDS DB by Nucleotide ID:ENST00000449862Re-query CCDS DB by Protein ID:ENSP00000403438
Original member Current member EBI ENST00000515780.6 ENSP00000420919.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000515780.6Link to Ensembl Protein Viewer:ENSP00000420919.1Re-query CCDS DB by Nucleotide ID:ENST00000515780Re-query CCDS DB by Protein ID:ENSP00000420919
Original member Current member NCBI NM_001080506.3 NP_001073975.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080506.3Link to Protein Sequence:NP_001073975.1Re-query CCDS DB by Nucleotide ID:NM_001080506Re-query CCDS DB by Protein ID:NP_001073975Link to BLAST:NP_001073975.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073975.1 249 B9EJG8-1 249 100% 0 0

Chromosomal Locations for CCDS 47087.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 82485511 82485719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82490061 82490238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82496068 82496195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82502727 82502794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82502895 82502927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82503059 82503112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82504578 82504657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (750 nt):
ATGGATGGGAAGAAATGCAGCGTATGGATGTTCCTACCTCTTGTATTTACTTTGTTTACTTCAGCTGGAT
TGTGGATAGTATACTTCATAGCTGTGGAAGATGACAAAATTTTACCATTAAATTCAGCTGAAAGGAAACC
TGGTGTGAAGCATGCACCATATATAAGCATTGCAGGTGATGATCCTCCTGCAAGCTGTGTGTTTAGTCAA
GTTATGAACATGGCAGCCTTCCTAGCCCTTGTGGTAGCTGTTCTGCGCTTCATACAACTGAAACCGAAGG
TTTTAAACCCGTGGCTGAATATTAGTGGATTGGTGGCTCTGTGTCTGGCTTCCTTCGGAATGACCTTACT
TGGTAATTTTCAGCTCACAAATGATGAAGAAATCCATAACGTCGGAACTTCCTTGACCTTTGGATTTGGC
ACATTGACCTGCTGGATCCAGGCTGCGCTGACACTCAAGGTCAACATCAAGAATGAAGGACGGAGAGTTG
GAATTCCACGGGTTATTCTGTCGGCATCTATCACTCTCTGTGTGGTCCTCTACTTCATCCTCATGGCCCA
AAGCATCCACATGTATGCAGCCAGGGTCCAGTGGGGCCTGGTCATGTGCTTCCTGTCTTATTTTGGCACC
TTTGCCGTGGAGTTCCGGCATTACCGCTATGAGATTGTTTGCTCTGAGTACCAGGAGAATTTCCTAAGCT
TCTCAGAAAGCCTGTCAGAAGCTTCTGAATATCAGACTGACCAGGTGTAA

Translation (249 aa):
MDGKKCSVWMFLPLVFTLFTSAGLWIVYFIAVEDDKILPLNSAERKPGVKHAPYISIAGDDPPASCVFSQ
VMNMAAFLALVVAVLRFIQLKPKVLNPWLNISGLVALCLASFGMTLLGNFQLTNDEEIHNVGTSLTFGFG
TLTCWIQAALTLKVNIKNEGRRVGIPRVILSASITLCVVLYFILMAQSIHMYAARVQWGLVMCFLSYFGT
FAVEFRHYRYEIVCSEYQENFLSFSESLSEASEYQTDQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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