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Report for CCDS79694.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79694.1 Public Mus musculus 19 Ms4a2 23 108 98 CCDS HistoryNCBI Gene:14126Re-query CCDS DB by CCDS ID:79694.1Re-query CCDS DB by GeneID:14126See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79694.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000189641.1 ENSMUSP00000139841.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189641.1Link to Ensembl Protein Viewer:ENSMUSP00000139841.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189641Re-query CCDS DB by Protein ID:ENSMUSP00000139841
Original member Current member NCBI NM_001276330.1 NP_001263259.1 Accepted alive Link to Nucleotide Sequence:NM_001276330.1Link to Protein Sequence:NP_001263259.1Re-query CCDS DB by Nucleotide ID:NM_001276330Re-query CCDS DB by Protein ID:NP_001263259Link to BLAST:NP_001263259.1

Chromosomal Locations for CCDS 79694.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11617473 11617571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11618416 11618514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11618727 11618783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11619617 11619673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11622043 11622177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11622683 11622782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11623560 11623621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (609 nt):
ATGGACACAGAAAATAGGAGCAGAGCAGATCTTGCTCTCCCAAATCCACAAGAATCCTCCAGTGCACCTG
ACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAA
GAAAGAGTTGGAGTTCCTGGGAGCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATT
GTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCAT
TCTGGGGTGCAGTGCTGTTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTA
TCTGAGACACCGTCCTCCCTTTGGAATCTCCATCTCTAAAATAGAGTTCTGTACTAAGGAGGAACTGGTG
TTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGAC
AAGAGTTAGAAAGTAAAAAGGTCCCAGATGATCGTCTTTATGAAGAATTAAATGTGTATTCACCAATTTA
CAGTGAGTTGGAAGACAAAGGGGAAACATCTTCTCCAGTTGATTCATAA

Translation (202 aa):
MDTENRSRADLALPNPQESSSAPDIELLEASPAKAAPPKQTWRTFLKKELEFLGATQILVGLICLCFGTI
VCSVLYVSDFDEEVLLLYKLGYPFWGAVLFVLSGFLSIISERKNTLYLRHRPPFGISISKIEFCTKEELV
LMMLFLTILAFCSAVLFTIYRIGQELESKKVPDDRLYEELNVYSPIYSELEDKGETSSPVDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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