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Report for CCDS11527.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11527.1 Public Homo sapiens 17 HOXB2 24 110 108 CCDS HistoryNCBI Gene:3212Re-query CCDS DB by CCDS ID:11527.1Re-query CCDS DB by GeneID:3212See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11527.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330070.6 ENSP00000331741.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000330070.6Link to Ensembl Protein Viewer:ENSP00000331741.4Re-query CCDS DB by Nucleotide ID:ENST00000330070Re-query CCDS DB by Protein ID:ENSP00000331741
Original member Current member NCBI NM_002145.4 NP_002136.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002145.4Link to Protein Sequence:NP_002136.1Re-query CCDS DB by Nucleotide ID:NM_002145Re-query CCDS DB by Protein ID:NP_002136Link to BLAST:NP_002136.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002136.1 356 P14652 356 100% 0 0

Chromosomal Locations for CCDS 11527.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 48543068 48543747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48544521 48544911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGAATTTTGAATTTGAGAGGGAGATTGGGTTTATAAACAGCCAGCCGTCGCTCGCCGAGTGTCTGACTT
CC
TTCCCCGCTGTCTTGGAGACATTTCAAACTTCATCAATCAAGGAGTCGACATTAATTCCTCCTCCTCC
T
CCTTTCGAGCAAACCTTCCCCAGCCTCCAGCCCGGCGCCTCCACCCTTCAGAGACCCAGGAGCCAAAAG
CGA
GCCGAAGATGGGCCTGCTCTGCCGCCGCCACCGCCGCCGCCACTCCCCGCTGCCCCCCCGGCCCCCG
AG
TTCCCTTGGATGAAAGAGAAGAAATCCGCCAAGAAACCCAGCCAATCCGCCACGTCTCCTTCTCCGGC
C
GCCTCCGCCGTTCCGGCCTCCGGGGTCGGATCGCCTGCAGATGGCCTGGGACTGCCGGAGGCTGGTGGC
GGC
GGGGCGCGCAGGCTGCGCACGGCTTACACCAACACGCAGCTGCTGGAACTGGAGAAGGAATTCCACT
TT
AATAAGTACCTGTGCCGGCCACGCCGCGTCGAGATCGCGGCCTTGCTGGACCTCACCGAAAGGCAGGT
C
AAAGTCTGGTTTCAGAACCGGCGCATGAAGCACAAGCGGCAGACGCAGCACCGAGAGCCGCCGGATGGG
GAG
CCTGCCTGCCCGGGAGCCCTGGAGGACATCTGCGACCCTGCCGAGGAACCCGCGGCCAGCCCGGGCG
GC
CCCTCCGCCTCGCGGGCGGCGTGGGAAGCCTGCTGTCACCCGCCGGAGGTGGTGCCGGGGGCCTTAAG
C
GCGGACCCCCGGCCTTTAGCCGTTCGCTTAGAGGGCGCAGGCGCGTCGAGTCCCGGCTGCGCGCTGCGC
GGG
GCCGGCGGGCTGGAGCCCGGGCCATTGCCAGAAGACGTCTTCTCGGGGCGCCAGGATTCACCTTTCC
TT
CCCGACCTCAACTTCTTCGCGGCCGACTCCTGTCTCCAGCTATCCGGAGGCCTCTCCCCTAGCCTACA
G
GGTTCTCTCGACAGCCCGGTCCCTTTTTCCGAGGAAGAGCTGGATTTTTTCACCAGTACGCTCTGTGCC
ATC
GACCTGCAGTTTCCCTAA


Translation (356 aa):
MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPPPPPFEQTFPSLQPGASTLQRPRSQK
R
AEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPA
DGLGLPEAGG
G
GARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPDG
E
PACPGALEDICDPAEEPAASPGGPSASRAAWEACCHPPEVVPGALSADPRPLAVRLEGAGASSPGCALR
G
AGGLEPGPLPEDVFSGRQDSPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSPVPFSEEELDFFTSTLCA
I
DLQFP




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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