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Report for CCDS768.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
768.1 Public Homo sapiens 1 RTCA 24 110 108 CCDS HistoryNCBI Gene:8634Re-query CCDS DB by CCDS ID:768.1Re-query CCDS DB by GeneID:8634See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 768.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370128.9 ENSP00000359146.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370128.9Link to Ensembl Protein Viewer:ENSP00000359146.4Re-query CCDS DB by Nucleotide ID:ENST00000370128Re-query CCDS DB by Protein ID:ENSP00000359146
Original member Current member NCBI NM_003729.4 NP_003720.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003729.4Link to Protein Sequence:NP_003720.1Re-query CCDS DB by Nucleotide ID:NM_003729Re-query CCDS DB by Protein ID:NP_003720Link to BLAST:NP_003720.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003720.1 366 O00442-1 366 100% 0 0

Chromosomal Locations for CCDS 768.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 100266376 100266420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100266524 100266624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100268152 100268295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100270557 100270680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100273394 100273452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100274824 100274965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100275599 100275723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100277258 100277316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100285228 100285322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100287099 100287203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100291403 100291504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGGCGGGGCCGCGGGTGGAGGTCGATGGCAGCATCATGGAAGGGGGCGGCCAGATCCTGAGAGTCTCTA
CGGCCTTGAGCTGTCTCCTAGGCCTCCCCTTGCGGGTGCAGAAGATCCGAGCCGGCCGGAGCACGCCAGG
CCTGAGGCCTCAACATTTATCTGGACTGGAAATGATTCGAGATTTGTGTGATGGGCAACTGGAGGGGGCA
GAAATTGGCTCAACAGAAATAACCTTTACACCAGAGAAGATCAAAGGTGGAATCCACACAGCAGATACCA
AGACAGCAGGGAGTGTGTGCCTCTTGATGCAGGTCTCAATGCCGTGTGTTCTCTTTGCTGCTTCTCCATC
AGAACTTCATTTGAAAGGTGGAACTAATGCTGAAATGGCACCACAGATCGATTATACAGTGATGGTCTTC
AAGCCAATTGTTGAAAAATTTGGTTTCATATTTAATTGTGACATTAAAACAAGGGGATATTACCCAAAAG
GGGGTGGTGAAGTGATTGTTCGAATGTCACCAGTTAAACAATTGAACCCTATAAATTTAACTGAGCGTGG
CTGTGTGACTAAGATATATGGAAGAGCTTTCGTTGCTGGTGTTTTGCCATTTAAAGTAGCAAAAGATATG
GCAGCGGCAGCAGTTAGATGCATCAGAAAGGAGATCCGGGATTTGTATGTTAACATCCAGCCTGTTCAAG
AACCTAAAGACCAAGCATTTGGCAATGGAAATGGAATAATAATTATTGCTGAGACCTCCACTGGCTGTTT
GTTTGCTGGATCATCGCTTGGTAAACGAGGTGTAAATGCAGACAAAGTTGGAATTGAAGCTGCCGAAATG
CTATTAGCAAATCTTAGACATGGTGGTACTGTGGATGAGTATCTGCAAGACCAGCTGATTGTTTTCATGG
CATTAGCCAATGGAGTTTCCAGAATAAAAACAGGACCAGTTACACTCCATACGCAAACCGCGATACATTT
TGCTGAACAAATAGCAAAGGCTAAATTTATTGTGAAGAAATCAGAAGATGAAGAAGACGCCGCTAAAGAT
ACTTATATTATTGAATGCCAAGGAATTGGGATGACAAATCCAAATCTATAG

Translation (366 aa):
MAGPRVEVDGSIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMIRDLCDGQLEGA
EIGSTEITFTPEKIKGGIHTADTKTAGSVCLLMQVSMPCVLFAASPSELHLKGGTNAEMAPQIDYTVMVF
KPIVEKFGFIFNCDIKTRGYYPKGGGEVIVRMSPVKQLNPINLTERGCVTKIYGRAFVAGVLPFKVAKDM
AAAAVRCIRKEIRDLYVNIQPVQEPKDQAFGNGNGIIIIAETSTGCLFAGSSLGKRGVNADKVGIEAAEM
LLANLRHGGTVDEYLQDQLIVFMALANGVSRIKTGPVTLHTQTAIHFAEQIAKAKFIVKKSEDEEDAAKD
TYIIECQGIGMTNPNL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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