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Report for CCDS34465.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34465.1 Public Homo sapiens 6 SUPT3H 24 110 108 CCDS HistoryNCBI Gene:8464Re-query CCDS DB by CCDS ID:34465.1Re-query CCDS DB by GeneID:8464See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34465.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371459.6 ENSP00000360514.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371459.6Link to Ensembl Protein Viewer:ENSP00000360514.1Re-query CCDS DB by Nucleotide ID:ENST00000371459Re-query CCDS DB by Protein ID:ENSP00000360514
Original member Current member EBI ENST00000475057.5 ENSP00000436411.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000475057.5Link to Ensembl Protein Viewer:ENSP00000436411.1Re-query CCDS DB by Nucleotide ID:ENST00000475057Re-query CCDS DB by Protein ID:ENSP00000436411
Original member Current member NCBI NM_001350329.2 NP_001337258.1 Accepted alive Link to Nucleotide Sequence:NM_001350329.2Link to Protein Sequence:NP_001337258.1Re-query CCDS DB by Nucleotide ID:NM_001350329Re-query CCDS DB by Protein ID:NP_001337258Link to BLAST:NP_001337258.1
Original member Current member NCBI NM_003599.4 NP_003590.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003599.4Link to Protein Sequence:NP_003590.1Re-query CCDS DB by Nucleotide ID:NM_003599Re-query CCDS DB by Protein ID:NP_003590Link to BLAST:NP_003590.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001337258.1 317 O75486-1 317 100% 0 0
NP_003590.1 317 O75486-1 317 100% 0 0

Chromosomal Locations for CCDS 34465.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 44829816 44829857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44932653 44932763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44953310 44953417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44954495 44954607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44961753 44961828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 45003653 45003792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 45014801 45014891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 45020546 45020632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 45105922 45106006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 45365201 45365301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGAATAATACGGCAGCTAGTCCAATGTCTACTGCAACTTCAAGTAGTGGAAGGAGTACAGGGAAGTCTA
TAAGCTTTGCAACAGAATTACAGAGTATGATGTATTCTTTAGGTGATGCTAGAAGGCCTCTTCATGAAAC
AGCAGTTTTGGTAGAAGATGTGGTACACACTCAGTTAATTAATCTGTTACAGCAAGCTGCTGAAGTTTCT
CAGCTGCGGGGAGCAAGGGTAATCACTCCTGAAGATCTTCTGTTTTTGATGCGCAAAGATAAGAAAAAAC
TTAGAAGACTGCTAAAATACATGTTTATCCGAGACTACAAATCAAAGATTGTCAAAGGCATCGATGAGGA
TGATCTTCTCGAAGACAAATTGAGTGGCAGCAATAATGCGAACAAAAGACAAAAGATTGCTCAGGACTTC
CTCAACTCTATTGACCAGACAGGAGAACTTTTAGCAATGTTTGAAGATGACGAAATTGATGAAGTTAAAC
AAGAAAGAATGGAGAGAGCAGAAAGACAAACTCGAATTATGGATTCAGCTCAATATGCAGAATTCTGTGA
AAGTCGACAATTAAGTTTCTCCAAAAAAGCTTCCAAATTTCGAGACTGGTTGGACTGCAGCAGTATGGAG
ATAAAACCCAATGTTGTCGCAATGGAAATCTTAGCATATTTAGCGTATGAAACTGTGGCACAGTTAGTGG
ATCTGGCTCTTCTTGTGAGGCAAGACATGGTAACCAAGGCAGGGGACCCCTTCAGCCATGCCATTTCTGC
AACCTTCATTCAGTATCACAACTCTGCTGAGAGCACTGCAGCCTGTGGTGTTGAGGCTCACAGCGATGCC
ATCCAGCCCTGCCACATCAGAGAGGCCATTCGACGCTACAGCCACAGGATTGGCCCACTTTCCCCATTCA
CAAATGCCTACCGCAGGAATGGGATGGCTTTTCTAGCCTGCTGA

Translation (317 aa):
MNNTAASPMSTATSSSGRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVVHTQLINLLQQAAEVS
QLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDEDDLLEDKLSGSNNANKRQKIAQDF
LNSIDQTGELLAMFEDDEIDEVKQERMERAERQTRIMDSAQYAEFCESRQLSFSKKASKFRDWLDCSSME
IKPNVVAMEILAYLAYETVAQLVDLALLVRQDMVTKAGDPFSHAISATFIQYHNSAESTAACGVEAHSDA
IQPCHIREAIRRYSHRIGPLSPFTNAYRRNGMAFLAC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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