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Report for CCDS1605.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1605.1 Public Homo sapiens 1 TBCE 24 110 108 CCDS HistoryNCBI Gene:6905Re-query CCDS DB by CCDS ID:1605.1Re-query CCDS DB by GeneID:6905See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1605.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000406207.5 ENSP00000384571.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000406207.5Link to Ensembl Protein Viewer:ENSP00000384571.1Re-query CCDS DB by Nucleotide ID:ENST00000406207Re-query CCDS DB by Protein ID:ENSP00000384571
Original member Current member EBI ENST00000645351.1 ENSP00000494319.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000645351.1Link to Ensembl Protein Viewer:ENSP00000494319.1Re-query CCDS DB by Nucleotide ID:ENST00000645351Re-query CCDS DB by Protein ID:ENSP00000494319
Original member Current member EBI ENST00000646624.1 ENSP00000494575.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000646624.1Link to Ensembl Protein Viewer:ENSP00000494575.1Re-query CCDS DB by Nucleotide ID:ENST00000646624Re-query CCDS DB by Protein ID:ENSP00000494575
Original member Current member EBI ENST00000647186.1 ENSP00000494775.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647186.1Link to Ensembl Protein Viewer:ENSP00000494775.1Re-query CCDS DB by Nucleotide ID:ENST00000647186Re-query CCDS DB by Protein ID:ENSP00000494775
Original member Current member EBI ENST00000642610.2 ENSP00000494796.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000642610.2Link to Ensembl Protein Viewer:ENSP00000494796.1Re-query CCDS DB by Nucleotide ID:ENST00000642610Re-query CCDS DB by Protein ID:ENSP00000494796
Original member Current member EBI ENST00000645655.1 ENSP00000495202.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000645655.1Link to Ensembl Protein Viewer:ENSP00000495202.1Re-query CCDS DB by Nucleotide ID:ENST00000645655Re-query CCDS DB by Protein ID:ENSP00000495202
Original member Current member EBI ENST00000645205.1 ENSP00000495823.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000645205.1Link to Ensembl Protein Viewer:ENSP00000495823.1Re-query CCDS DB by Nucleotide ID:ENST00000645205Re-query CCDS DB by Protein ID:ENSP00000495823
Original member Current member NCBI NM_001079515.3 NP_001072983.1 Accepted alive Link to Nucleotide Sequence:NM_001079515.3Link to Protein Sequence:NP_001072983.1Re-query CCDS DB by Nucleotide ID:NM_001079515Re-query CCDS DB by Protein ID:NP_001072983Link to BLAST:NP_001072983.1
Original member Current member NCBI NM_003193.5 NP_003184.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003193.5Link to Protein Sequence:NP_003184.1Re-query CCDS DB by Nucleotide ID:NM_003193Re-query CCDS DB by Protein ID:NP_003184Link to BLAST:NP_003184.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001072983.1 527 Q15813-1 527 100% 0 0
NP_003184.1 527 Q15813-1 527 100% 0 0

Chromosomal Locations for CCDS 1605.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 235380050 235380149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235401503 235401587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235414433 235414618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235419473 235419561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235427140 235427239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235430705 235430804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235434204 235434280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235435745 235435840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235436386 235436450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235436544 235436608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235437322 235437474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235438769 235438922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235441814 235441882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235442852 235442911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235448349 235448440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235448670 235448762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1584 nt):
ATGAGTGACACTTTGACAGCGGATGTCATTGGTCGAAGAGTTGAAGTTAATGGAGAACATGCAACAGTAC
GTTTTGCTGGTGTTGTCCCTCCCGTGGCAGGACCCTGGTTAGGAGTAGAATGGGACAATCCCGAGAGAGG
AAAGCATGATGGGAGCCACGAAGGGACTGTGTATTTTAAATGCAGGCACCCGACAGGAGGATCCTTTATT
CGTCCGAACAAGGTAAATTTTGGAACAGACTTTCTTACTGCAATTAAGAACCGCTATGTGTTAGAAGATG
GACCAGAGGAAGATAGAAAAGAGCAAATTGTTACAATTGGAAATAAACCTGTGGAGACTATCGGTTTTGA
CTCTATTATGAAACAGCAAAGTCAGCTGAGCAAGTTGCAAGAAGTTTCTCTGAGGAACTGTGCAGTAAGT
TGTGCTGGTGAAAAAGGAGGAGTTGCTGAAGCATGTCCTAATATCAGAAAGGTAGATTTGTCAAAAAACC
TGTTGTCATCATGGGATGAAGTGATACACATTGCTGATCAGCTCAGACACCTGGAAGTCCTTAATGTCAG
TGAAAATAAACTAAAATTTCCCTCCGGTTCAGTATTAACTGGAACGCTTTCTGTACTGAAGGTTTTAGTC
CTCAATCAAACAGGAATAACGTGGGCTGAGGTGCTGCGGTGTGTCGCGGGGTGCCCAGGCCTGGAGGAAC
TCTACCTTGAGTCTAACAACATTTTCATTTCCGAAAGGCCAACAGATGTTCTCCAGACAGTCAAGTTATT
AGATCTTTCCTCTAATCAATTAATTGATGAAAATCAGCTGTATCTGATAGCCCACCTGCCCAGGTTAGAA
CAATTAATCCTCTCTGACACTGGAATTTCTTCTCTACATTTTCCGGATGCTGGAATTGGGTGCAAAACGT
CCATGTTCCCATCCTTGAAGTACCTGGTAGTAAACGACAATCAGATATCACAATGGTCGTTTTTCAATGA
GCTAGAGAAGTTACCAAGTCTACGGGCTTTGTCCTGCCTAAGAAACCCCCTGACCAAAGAGGACAAAGAA
GCAGAGACGGCGCGACTACTCATTATCGCCAGCATTGGCCAGCTGAAGACGCTGAACAAATGTGAGATTC
TCCCCGAGGAGAGGCGGAGAGCTGAGCTTGACTACCGAAAAGCTTTTGGAAATGAGTGGAAACAGGCTGG
TGGACATAAGGATCCGGAAAAAAACAGACTCAGCGAAGAATTCCTCACAGCCCATCCCAGATACCAGTTC
CTCTGCCTGAAATATGGTGCACCTGAAGATTGGGAACTCAAAACACAGCAACCACTTATGCTGAAAAACC
AGCTACTAACACTGAAGATAAAATACCCTCATCAACTTGATCAGAAAGTCCTGGAGAAACAACTGCCGGG
CTCCATGACAATTCAAAAGGTGAAGGGATTGCTGTCACGTCTTCTCAAAGTTCCTGTGTCAGACCTTCTG
TTGTCCTATGAAAGTCCCAAAAAGCCGGGCAGAGAAATCGAGCTGGAAAATGACCTAAAGTCATTACAGT
TTTATTCTGTGGAAAATGGAGATTGTCTATTAGTGCGATGGTGA

Translation (527 aa):
MSDTLTADVIGRRVEVNGEHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFKCRHPTGGSFI
RPNKVNFGTDFLTAIKNRYVLEDGPEEDRKEQIVTIGNKPVETIGFDSIMKQQSQLSKLQEVSLRNCAVS
CAGEKGGVAEACPNIRKVDLSKNLLSSWDEVIHIADQLRHLEVLNVSENKLKFPSGSVLTGTLSVLKVLV
LNQTGITWAEVLRCVAGCPGLEELYLESNNIFISERPTDVLQTVKLLDLSSNQLIDENQLYLIAHLPRLE
QLILSDTGISSLHFPDAGIGCKTSMFPSLKYLVVNDNQISQWSFFNELEKLPSLRALSCLRNPLTKEDKE
AETARLLIIASIGQLKTLNKCEILPEERRRAELDYRKAFGNEWKQAGGHKDPEKNRLSEEFLTAHPRYQF
LCLKYGAPEDWELKTQQPLMLKNQLLTLKIKYPHQLDQKVLEKQLPGSMTIQKVKGLLSRLLKVPVSDLL
LSYESPKKPGREIELENDLKSLQFYSVENGDCLLVRW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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