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Report for CCDS25164.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25164.1 Public Mus musculus 11 Gas2l2 23 108 98 CCDS HistoryNCBI Gene:237891Re-query CCDS DB by CCDS ID:25164.1Re-query CCDS DB by GeneID:237891See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25164.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052521.8 ENSMUSP00000051907.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052521.8Link to Ensembl Protein Viewer:ENSMUSP00000051907.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000052521Re-query CCDS DB by Protein ID:ENSMUSP00000051907
Original member Current member NCBI NM_001013759.2 NP_001013781.1 Accepted alive Link to Nucleotide Sequence:NM_001013759.2Link to Protein Sequence:NP_001013781.1Re-query CCDS DB by Nucleotide ID:NM_001013759Re-query CCDS DB by Protein ID:NP_001013781Link to BLAST:NP_001013781.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013781.1 860 Q5SSG4 860 100% 0 0

Chromosomal Locations for CCDS 25164.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 83421902 83423402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83424244 83424493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83425060 83425156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83426216 83426323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83427255 83427496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83429044 83429428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2583 nt):
ATGTCTCAGCATGTGGGACATGGGAGGAGACCCAGGACCCCAGGACCTCCTGTGCGCAGCATCCGGCCCT
TCAAGTCCAGCGAGCAGTACCTGGAGGCCATGAAGGAAGACCTGGCTGAGTGGCTTCGGGATCTGTACGG
GCTGGACATCGATGCAGACAACTTCCTGCGGGTGCTGGAGACTGGCCTGGTGTTGTGCCGGCATGCCAAC
ACTGTCACGGAGGCTGCTCTGGCCTTCCTGGCTGAGGCACCTGAGCGAGCTCAAAAGATTCCCATGCCCC
AGGCTGGAGTTTTCTGCAATGGGGCTGCTCAGCCGGGTACCTTCCAGGCCAGGGACAACATCTCCAACTT
CATCCAGTGGTGTCGCAAGGAGATGGGGATCCAAGAGGTGCTGATGTTCGAGACAGAGGACCTAGTGCTC
CGCAAGAACGTGAAGAGCGTGGTACTGTGTCTGCTGGAGCTGGGTCGCCGCGCTTGGCGCTTCGGTGTGG
CGGCGCCCGCCCTGGTGCATCTGGAAGAGGAAATTGATGAGGAGCTGCGGCGCGACCTGGCCTTGCCATC
GCCCGACCCACCACCGCCCATACCCCCTGCCCGCAGGCCTTGCCACTTCCACAACCTGGACCAGATGGTG
CAGAGCCTCGTCAGCCATTGCACATGCCCAGTGCAATTCTCCATGGTCAAGATATCTGAGGGGAAGTACA
GAGTGGGGGACTCCAACACTCTCATCTTCATCCGGATCCTCCGGAGCCACGTGATGGTGCGTGTTGGGGG
TGGCTGGGACACGCTGGGCCATTATCTGGATAAACATGACCCCTGCCGGTGCACGTCCCTCTCCCACAAG
CCAGGCAGCTTCCTGAAGCCCCCAGGACCACCGGTGCAGCACGAAGTGAAGGTGCAGGATGGGCCCTCAC
AACCCCAGCCTACAATGACCATCAGCCGCTCACAGAGCCCACTGCCTCCAGTGGACTGGAAGACATACAC
CTCTTCCAGCCGAAAGCTGAGACCTCCCACACCTTCCTCTCCTGGACTCCGTAGTGAACCCCCAGTGAGG
GCCAGAACCCTCAGAGAGGATCCACTCCCAAGGTCCCAAGAGAAACCAACTCCATCTCAGAGGATGTCAT
CACCTGGTCCCCAATTCTCATCTACTTGTAGGGGGCCAGACCTACAGAGTACCCTGTCTGGGAAGAGAGC
AAACAGATGCCCAGGTGAACCGCCCAGAGGAAGGACTCCCACATTGTGGGTTCACAAGGAAGCAGGCAGT
CGAGGAACACACACCAAGGCCCCCACACCACAGAGGCTCCAAATCCCTGAGGCCACCAGCAAAAGGACGT
CAGCAAGGGGACCATCGCCCCCACCTCGTTCCTCCAGCCTAGCCAGTCCTCACATGATCTGGGTCCTGCA
CCAGGGTGCCTCCCCACAGCTCAGTGAACCCATGACTGTTCATTCCTCATCCCCTGGCAAAGGGCTCACC
AAAATCCCTATCCGGTTGTCCCCTGCCCGGCCCCCAACTCCAGGAAGAAGCTCTTTGGGTACTGAAGGTG
AATACTCCACGGGGAGAGGCTCCATCTCATCAAGGGCCCTCGAAGGGAACCTGGATAGATCCACACATGG
GCATCACTCTGTGGAAGCAAGTGGGGACCACCAGACAGACATCCAGACTACTTCAGAGACTGAGGATCCC
AGGAGCTTGGGTACACAGAAGTGGAAAGAGAGACACACCTCTTTGGCCCTGGGCAGGCGCAGAGAGCAAG
CCCTCTATGATAACCTTAAAGAGGAGGTTGTGGCCAACATGAAGCTGCTGGAGGTGGGGACTGCCTACAC
TCAGGGTACAAGGTCTCAAGCCATCCCTCGAAGTGGGGTCTATGTTCCTAGCCTGGGTGGGAGGTGGCCT
GAGCCTGGGGGTCCTTATGATAAAGTCATCCGGGAACTGGTTCAGGGTCCCCCACCCCTCCTTAAAGTGG
ATCTGAAAGCCTGGAAGGTTGGATCTGAATGCCTTCCTAGGCCAATTGTGGACCCAGGAAGCCCCAAAGA
GAAGCTAGGTTCCAGAGAAACGGGGACAAGGATAAAGGCAAGCCTGAATGCTGAGGATACCACAGTGAGG
ACTGTATCACCTGCAAGAGGGCAGGGGTGCTCAACCCCGCCTGTATCTGCCAACCTGGAGGCTCCCACAC
GTTCATGCTCAGACCCCAGTTCTGACAAAGCCAGTGTATGTCTGGGCAAGGGCAAGAGAACTCTCCGGAA
GCCCCAGAAGATCCCATCCATTTACAAGCTGAAGCTGAGACCCAGAATCCGGCCTCGTAGAGACCATAGA
CCTGAGAAGAGACCTTCCAGAATTCCCAAGCCACTGCCTTACTCCTGCCTGGTTCTAGCCAGGACAGCTC
CTGGAAGCAGGCTATTAAAAGCTACATTGGGTGGCAAGGGAGGGGTCCCCTGCCAGGTGAATGGAACAGG
TAAGAAGGAGGAAGAGAAAAAGAAAGGAGGCAGCAACATCTCCTTGGAGAGCAGCATCCAGCCCGCAGAG
AGCCAGGAGCCTCTGAAGCTTGGTGGAACCCCACTTTCACCCGAGGAGGAATCTTGGGTCTGA

Translation (860 aa):
MSQHVGHGRRPRTPGPPVRSIRPFKSSEQYLEAMKEDLAEWLRDLYGLDIDADNFLRVLETGLVLCRHAN
TVTEAALAFLAEAPERAQKIPMPQAGVFCNGAAQPGTFQARDNISNFIQWCRKEMGIQEVLMFETEDLVL
RKNVKSVVLCLLELGRRAWRFGVAAPALVHLEEEIDEELRRDLALPSPDPPPPIPPARRPCHFHNLDQMV
QSLVSHCTCPVQFSMVKISEGKYRVGDSNTLIFIRILRSHVMVRVGGGWDTLGHYLDKHDPCRCTSLSHK
PGSFLKPPGPPVQHEVKVQDGPSQPQPTMTISRSQSPLPPVDWKTYTSSSRKLRPPTPSSPGLRSEPPVR
ARTLREDPLPRSQEKPTPSQRMSSPGPQFSSTCRGPDLQSTLSGKRANRCPGEPPRGRTPTLWVHKEAGS
RGTHTKAPTPQRLQIPEATSKRTSARGPSPPPRSSSLASPHMIWVLHQGASPQLSEPMTVHSSSPGKGLT
KIPIRLSPARPPTPGRSSLGTEGEYSTGRGSISSRALEGNLDRSTHGHHSVEASGDHQTDIQTTSETEDP
RSLGTQKWKERHTSLALGRRREQALYDNLKEEVVANMKLLEVGTAYTQGTRSQAIPRSGVYVPSLGGRWP
EPGGPYDKVIRELVQGPPPLLKVDLKAWKVGSECLPRPIVDPGSPKEKLGSRETGTRIKASLNAEDTTVR
TVSPARGQGCSTPPVSANLEAPTRSCSDPSSDKASVCLGKGKRTLRKPQKIPSIYKLKLRPRIRPRRDHR
PEKRPSRIPKPLPYSCLVLARTAPGSRLLKATLGGKGGVPCQVNGTGKKEEEKKKGGSNISLESSIQPAE
SQEPLKLGGTPLSPEEESWV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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