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Report for CCDS43100.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43100.1 Public Homo sapiens 3 GNL3 24 110 108 CCDS HistoryNCBI Gene:26354Re-query CCDS DB by CCDS ID:43100.1Re-query CCDS DB by GeneID:26354See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43100.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394799.6 ENSP00000378278.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394799.6Link to Ensembl Protein Viewer:ENSP00000378278.2Re-query CCDS DB by Nucleotide ID:ENST00000394799Re-query CCDS DB by Protein ID:ENSP00000378278
Original member Current member NCBI NM_206825.2 NP_996561.1 Accepted alive Link to Nucleotide Sequence:NM_206825.2Link to Protein Sequence:NP_996561.1Re-query CCDS DB by Nucleotide ID:NM_206825Re-query CCDS DB by Protein ID:NP_996561Link to BLAST:NP_996561.1
Original member Current member NCBI NM_206826.1 NP_996562.1 Accepted alive Link to Nucleotide Sequence:NM_206826.1Link to Protein Sequence:NP_996562.1Re-query CCDS DB by Nucleotide ID:NM_206826Re-query CCDS DB by Protein ID:NP_996562Link to BLAST:NP_996562.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_996561.1 537 Q9BVP2-2 537 100% 0 0
NP_996562.1 537 Q9BVP2-2 537 100% 0 0

Chromosomal Locations for CCDS 43100.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 52686792 52686827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52687246 52687383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52687502 52687615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52688109 52688192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52689074 52689206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52690592 52690704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52690945 52691071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52691542 52691629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52692872 52693046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52693187 52693329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52693408 52693544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52693632 52693807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52694037 52694103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52694193 52694275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1614 nt):
ATGACCTGCCATAAGCGGTATAAAATCCAAAAAAAGGTTCGAGAACATCATCGAAAATTAAGAAAGGAGG
CTAAAAAGCGGGGTCACAAGAAGCCTAGGAAAGACCCAGGAGTTCCAAACAGTGCTCCCTTTAAGGAGGC
TCTTCTTAGGGAAGCTGAGCTAAGGAAACAGAGGCTTGAAGAACTAAAACAGCAGCAGAAACTTGACAGG
CAGAAGGAACTAGAAAAGAAAAGAAAACTTGAAACTAATCCTGATATTAAGCCATCAAATGTGGAACCTA
TGGAAAAGGAGTTTGGGCTTTGCAAAACTGAGAACAAAGCCAAGTCGGGCAAACAGAATTCAAAGAAGCT
GTACTGCCAAGAACTTAAAAAGGTGATTGAAGCCTCCGATGTTGTCCTAGAGGTGTTGGATGCCAGAGAT
CCTCTTGGTTGCAGATGTCCTCAGGTAGAAGAGGCCATTGTCCAGAGTGGACAGAAAAAGCTGGTACTTA
TATTAAATAAATCAGATCTGGTACCAAAGGAGAATTTGGAGAGCTGGCTAAATTATTTGAAGAAAGAATT
GCCAACAGTGGTGTTCAGAGCCTCAACAAAACCAAAGGATAAAGGGAAGATAACCAAGCGTGTGAAGGCA
AAGAAGAATGCTGCTCCATTCAGAAGTGAAGTCTGCTTTGGGAAAGAGGGCCTTTGGAAACTTCTTGGAG
GTTTTCAGGAAACTTGCAGCAAAGCCATTCGGGTTGGAGTAATTGGTTTCCCAAATGTGGGGAAAAGCAG
CATTATCAATAGCTTAAAACAAGAACAGATGTGTAATGTTGGTGTATCCATGGGGCTTACAAGGAGCATG
CAAGTTGTCCCCTTGGACAAACAGATCACAATCATAGATAGTCCGAGCTTCATCGTATCTCCACTTAATT
CCTCCTCTGCGCTTGCTCTGCGAAGTCCAGCAAGTATTGAAGTAGTAAAACCGATGGAGGCTGCCAGTGC
CATCCTTTCCCAGGCTGATGCTCGACAGGTAGTACTGAAATATACTGTCCCAGGCTACAGGAATTCTCTG
GAATTTTTTACTGTGCTTGCTCAGAGAAGAGGTATGCACCAAAAAGGTGGAATCCCAAATGTTGAAGGTG
CTGCCAAACTGCTGTGGTCTGAGTGGACAGGTGCCTCATTAGCTTACTATTGCCATCCCCCTACATCTTG
GACTCCTCCTCCATATTTTAATGAGAGTATTGTGGTAGACATGAAAAGCGGCTTCAATCTGGAAGAACTG
GAAAAGAACAATGCACAGAGCATAAGAGCCATCAAGGGCCCTCATTTGGCCAATAGCATCCTTTTCCAGT
CTTCCGGTCTGACAAATGGAATAATAGAAGAAAAGGACATACATGAAGAATTGCCAAAACGGAAAGAAAG
GAAGCAGGAGGAGAGGGAGGATGACAAAGACAGTGACCAGGAAACTGTTGATGAAGAAGTTGATGAAAAC
AGCTCAGGCATGTTTGCTGCAGAAGAGACAGGGGAGGCACTGTCTGAGGAGACTACAGCAGGTGAACAGT
CTACAAGGTCTTTTATCTTGGATAAAATCATTGAAGAGGATGATGCTTATGACTTCAGTACAGATTATGT
GTAA

Translation (537 aa):
MTCHKRYKIQKKVREHHRKLRKEAKKRGHKKPRKDPGVPNSAPFKEALLREAELRKQRLEELKQQQKLDR
QKELEKKRKLETNPDIKPSNVEPMEKEFGLCKTENKAKSGKQNSKKLYCQELKKVIEASDVVLEVLDARD
PLGCRCPQVEEAIVQSGQKKLVLILNKSDLVPKENLESWLNYLKKELPTVVFRASTKPKDKGKITKRVKA
KKNAAPFRSEVCFGKEGLWKLLGGFQETCSKAIRVGVIGFPNVGKSSIINSLKQEQMCNVGVSMGLTRSM
QVVPLDKQITIIDSPSFIVSPLNSSSALALRSPASIEVVKPMEAASAILSQADARQVVLKYTVPGYRNSL
EFFTVLAQRRGMHQKGGIPNVEGAAKLLWSEWTGASLAYYCHPPTSWTPPPYFNESIVVDMKSGFNLEEL
EKNNAQSIRAIKGPHLANSILFQSSGLTNGIIEEKDIHEELPKRKERKQEEREDDKDSDQETVDEEVDEN
SSGMFAAEETGEALSEETTAGEQSTRSFILDKIIEEDDAYDFSTDYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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